Pseudoliparis swirei (Mariana hadal snailfish): 130192819
Help
Entry
130192819 CDS
T09868
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130192819 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130192819 (tgfbrap1)
Membrane trafficking [BR:
pswi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130192819 (tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
130192819
NCBI-ProteinID:
XP_056268963
LinkDB
All DBs
Position
4:complement(15925541..15937714)
Genome browser
AA seq
883 aa
AA seq
DB search
MSVDALAKMSVKAFELVPAVERELLMGDKARINIECIECCGRHLYMGTNDCFIHHFLLDE
VTSSKGKLSYSAQKLLHKHMGLKKPVAELRAASALERLIVLCDGIVFLVDMVTLETVPSA
TGGGAKIRGVNAFCINENPVNGDPFCVEMGVLSSKRRTVQIYMVYEDRVQLVKEVTTPEQ
PCAVSVDGYFLCLALTSQYMILNYNTGASQDLFPYNSEERRPIVKRIGREEFLLAAHGGL
GMFANAEGVSQRAPVNWSEGVIGAAVSFPYVVALDESFITIHSMLDQQLKQTLSFRDGHI
LQDFEGKVILASTKAVYVLVPLPLEKQIQDLLANHRVEEALILTEGAQQNIPKEKFQILH
KRILQQAGFIQFSQLQFLEAKEHFRKGQLDVRELISLYPLLLPASSSFTRCHPPLHEFAD
LNHLAQGDQEKVLRCKEFLITYLGEVRSTEVANGCREDVDTALLKLYAEQNHDSLLDLLA
SDNACLLADSVPWLDKYHKYFALGLLYRSNGQDSAALQLWIQVADGDLQDSTRADLYEYI
VDFLCSCSNLDLVWKYADWALRKDPTMGVHIFKKRPSSKELPELNPDDVVSYLGEHSQAL
LLYLEHLVLERRIKKEKFHTHLAMLYLERVLSLLSQSPTDEEQISRARERLQTLFRVSNL
YRAEFLLGKMENCERLLLERATLHGKLEEHDKALHILVHKLRDFPAAEAFCVWASSCRDS
VYREQLFHLLLGVYLDGNPPEKPQTAAGAGDLEMAAVDLLNRHGEVFDAVRVLHMLPEGW
SLQLLRPFLGRAIRASMHACRTSQIAMGLAHSENLQLLHDRLKDRKKPIFVSEKKGCHLC
HNTFSEPDVVCLPGGVPVHTHCVAQRVRDSPTKRQLTNSSSHT
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgatgccttggctaagatgagtgtgaaggcttttgagctagtccccgctgtg
gagagagagctcctcatgggcgacaaggctcgcatcaacatcgagtgcattgaatgctgt
ggaagacacttgtacatgggcaccaatgactgcttcatccaccacttcctgctggacgag
gtcacttcctccaaagggaaacttagttactcggctcagaagctgctgcacaaacatatg
ggcctcaagaaaccagttgctgagctgcgcgccgcctccgctttggagcgcctgatcgtg
ctttgtgatggaatcgtcttcctggtcgatatggtgacactggagaccgtgccctcggcg
acaggcggtggagccaagatcagaggcgtgaacgcattctgcattaacgagaaccctgtg
aacggtgacccgttctgtgtggaaatgggcgtgctctcctccaagcgtcgtacggtgcaa
atttacatggtgtacgaggaccgagtgcagctggtcaaagaggtgaccactcctgagcaa
ccttgtgccgtcagtgttgatggttacttcttgtgcctggccctcacttcacagtacatg
attctgaactacaacacaggagcctcccaagatctcttcccttacaacagtgaagagagg
aggcccattgtgaagcggattggcagggaggagttcctcttagcagcacatggcggtctg
ggaatgtttgccaatgcagaaggggtatcgcagcgggctccagtcaactggtcagagggt
gtgattggtgccgctgtgtcttttccgtacgtggttgctctggatgaaagcttcatcacc
atccacagcatgttggaccaacagctaaaacaaactctttcgttcagggacggacacatt
ctgcaagactttgaaggaaaggtaattctggcttccacgaaggcagtgtatgtcctggtg
ccgctgcccctggagaaacagatccaggacttactggccaatcacagagttgaggaggcg
ctcatcctcacagagggagcacagcaaaatattcccaaagaaaagttccagattttgcac
aaaagaatcctgcagcaggcaggtttcatacagtttagccaacttcagtttctagaagca
aaagaacacttcaggaagggtcagctggatgtgcgagagttgatatctctctaccctctg
ctgctgccagcgtcctcttcattcacacgctgccaccctcccctccatgagtttgcagat
ctcaaccacctggcacagggcgaccaggaaaaggttctgcgatgcaaggagttcctaatc
acttacttgggagaggtacgaagcacagaggtggccaatggctgcagagaggacgtggac
actgcactactaaagctgtacgctgaacagaatcatgacagccttctcgacctgctcgct
tcagacaacgcctgcctactagcagacagcgtcccatggctggataaatatcataaatat
tttgcacttgggctgctctatcgttctaatggtcaggattcagcagcacttcagctgtgg
attcaagtggcagatggggatctgcaggactccaccagagccgacctctatgagtacatc
gtggacttcctctgctcctgctccaatctggaccttgtgtggaagtatgcagactgggcc
ttgcggaaggatcccaccatgggtgtccacatctttaagaagaggccgtccagtaaagag
ctgccagaactgaaccctgatgatgttgtctcttacctgggagagcacagccaggcgctg
cttctctacctggaacacctggtgctggagagacggataaagaaggagaagttccacaca
cacctggccatgttgtacctggagagggtcttgtcactgttgtcgcagtcaccaacagac
gaagagcagatctctagagctcgagagaggctccaaactctgttcagggtgtccaacctt
taccgtgcagagtttctgttaggtaagatggagaactgtgaacgactgctgctagaacgt
gcaacactacatggaaaactggaggagcatgataaagcactgcatatattggtgcacaag
ctaagagacttcccggctgctgaggccttctgtgtatgggcctcttcttgccgggattcg
gtgtatcgagagcagctattccacctgctcttgggggtttatctagacgggaaccctcct
gagaaaccccagactgcagcaggagctggagacctggagatggcagcagtggacctccta
aatcggcacggcgaggtgttcgatgcagttcgggttctgcacatgcttcctgaaggctgg
tcactgcagctgctgcggccctttctgggtcgagccatccgggccagtatgcatgcctgc
cgcacctcccagatcgctatggggctagcccactcagaaaaccttcaactgctgcatgac
cggttgaaagaccgcaagaaaccaatctttgtgtcggaaaagaaaggatgccacctgtgc
cacaacaccttcagtgagcctgacgtggtgtgtctgccaggcggagtgcctgtccatacc
cactgtgtcgcccagagagtaagagactctcccacaaagagacagttaacaaatagcagt
agccatacgtga
DBGET
integrated database retrieval system
