Pseudoliparis swirei (Mariana hadal snailfish): 130192874
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Entry
130192874 CDS
T09868
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
130192874
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pswi01009
]
130192874
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130192874
Protein phosphatases and associated proteins [BR:
pswi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130192874
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Protocadherins
130192874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
Big_9
Neur_chan_memb
MAP17
Motif
Other DBs
NCBI-GeneID:
130192874
NCBI-ProteinID:
XP_056269027
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All DBs
Position
4:complement(17502154..17696440)
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AA seq
1236 aa
AA seq
DB search
MDLKDYYLLGTLFACLWLDPSIAQELIYPIREELQENVLIGNIPKDLNISHMNAATGASA
NLVYRLVSKAGDNPLVRVLSSTGEIFTTSNRMDREKLCPGPSFEDSECSFEIEVVILPND
YFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLITSRFAIPSATDPDTGPNSVHKYEL
INGQSAFGLDIVETPEGEKWPQLIVQQNLDREQRDTYVMKIKVEDGGSPQKSSTAILQVT
VTDVNDNRPVFKEVQIDVHIPENSQIGTSVVQLLATDADIGGNAEIRYVFGTQVSPATKR
LFALNTTSGLISVQRLLDREETAIHKLSVLASDGSSTPARATVTINVTDVNDNPPNIDLR
YIISPINGTVFLSEKDPINTKIALITVSDKDTDINGKVICFIEKDVPFHLKAVYDNQYLL
ETSALLDYEGTKEYNFKIVASDSGKPSLNQTALVRVRLEDENDNPPIFTQPVIELAIMEN
NKRDLFLTTLSATDEDSGKNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREDQDRFLFT
ITARDNGTPPLQTQAAIIVTVLDENDNNPKFTHNHFQFFVSENLPKYSTVGVITVTDSDA
GENAAVSLSILNDNENFILDPYSGVIKSNVSFDREQQSSYTFDVRAVDSGRPPCSSAAKV
TINVIDVNDNTPIVIYPPSNTSFKLVPLSSIPGSVVAEVFAVDGDTGMNAELKYTIVSGN
NKGLFRIDPVTGNITLEEKPAVTDIGLHRLVVNISDLGYPRSLHTLVLVFLYVNDTVGNS
TLIYDLIRRTMETPIDRNIGESSETYQSGDYLTIMIAFVTGALVVIIVIFVTVLLRCRHA
SRFKAAQRKKQGAEWMSPNTENKQNKKKKRKKRKSPKSSLLNFVTIEGNKPDDPAHEPIN
GTISLPTELEEQGIGRFDWNATPTTTFKPSSPDLARHYKSASPQSAFHLKADTPVSVKKH
HVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPMHTRQQGTLTRART
ELNPEYLDLRPRAELNPEYWTPCTPLSQRRVTFHLPDGSQESCSDSGLGDHEPVGSGSLL
TQPLPLVQAQDDFHEQASPDKRTEADGNSDPNSDGPLGPRGLVEATEMCTQECLILGHSD
NCWMPPTLGTYQQPKSPVSSFTSQREWGPKEKLLNGHTLTRTWKNESGRSEHFGDRKQFG
SGEGHFTSSGMADIPLVSLKSCQPASCPDIPKDHQL
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggatctaaaagactattacctgttgggcaccctatttgcctgcttatggctggatcct
tcaatagcccaagagctgatctaccccatcagagaggagttgcaagaaaatgtcctgatt
ggaaatataccaaaggacctaaacatttcccacatgaatgctgccactggagcaagtgct
aatcttgtgtaccggctcgtctccaaagcgggagataacccactggtgcgcgttctgagc
agtacgggcgagatattcacaacatcaaaccggatggacagggagaagttgtgccccggc
ccctcgtttgaggacagcgagtgctcctttgaaatcgaagtggtcatcctccctaatgac
tatttcaggctgattaagatcaaaataattgtgaaagacacaaacgataatgcccccatg
ttcccgtcccctgtgatcaacatctccatccccgagaacacgctcattaccagccgattt
gctattccttctgccactgacccagacactggccccaacagtgtccacaaatacgagctg
atcaacgggcaaagtgccttcggcttagacatagtcgaaacgcctgagggggagaagtgg
ccccagctcattgtgcagcagaatctggacagagagcagagggatacatatgtgatgaag
atcaaagtggaggatgggggcagtccacagaaatccagcaccgccattctgcaagttacg
gtgacggatgtcaatgataacaggccggtgtttaaagaggttcagatagatgtgcatata
ccagagaactcccagattggcacgtctgttgtgcagcttctggccacagatgcagacata
ggggggaatgcagagatacgttatgtgtttgggactcaggtgtctcctgctacgaaaaga
ctctttgcattaaacacaacatctggcctaatttccgtgcagaggctcctggacagagag
gagactgccattcataagctctctgttttagccagtgatggcagctccactcctgccaga
gctactgttaccataaatgtgactgatgttaatgacaatccgcctaatatagacctgcga
tacataatcagccccattaatggcactgttttcctctcggagaaggatcccatcaatact
aagatagctctcatcacggtgtcggataaagacacagacatcaacggcaaggtcatatgc
ttcatagagaaggatgtgcccttccatctcaaggccgtgtacgacaaccaatatctgctg
gagacctctgctctgctcgactacgaagggacaaaggaatacaactttaaaattgtggct
tctgactccgggaaaccaagcttgaatcagactgctttggtaagagtgaggctggaggat
gagaatgacaacccgcccattttcactcagccagtcattgagctggccatcatggaaaac
aacaaacgtgacctgttcctcactaccctgagcgccacagacgaggacagcgggaaaaac
gcagagatagtttatcagctgggcccgaatgcgtccttcttcgatctcgaccgtaaaacg
ggggtcctgactgcatccagggtttttgaccgggaggatcaggaccggtttctcttcact
atcacggcgagagacaacgggacgccccctctgcaaacgcaggcggccatcattgtaacc
gtgctggatgaaaatgataacaacccaaagttcacacacaaccactttcagttctttgtg
tctgagaatcttcctaaatacagcacagtgggcgtgataactgtgacagattcagatgcc
ggagaaaatgctgctgtttctctatccatactgaatgacaacgagaactttatactggat
ccctactctggagtgataaaatccaacgtgtcatttgacagggagcagcagagctcctac
actttcgatgtcagggccgtggacagtggcaggcccccttgttcctcggccgccaaggtg
accatcaatgtcattgacgttaacgacaacacccccatagtcatctatcccccctccaac
acgtcattcaagctcgtccctctctcctccatcccgggatccgtagtcgcagaggtgttt
gccgtagacggtgacacaggcatgaatgctgaactcaaatacacgattgtgagtggaaac
aacaaaggtttgttcagaattgaccctgtcactggcaatattactctggaggaaaaacca
gctgtgactgatataggcttgcacagattagtggtcaatattagtgacctgggatatccc
agatccctccatactctggtgctggtattcctgtatgtcaatgacaccgtgggcaactca
acgctcatctacgacctcatccgtcgcactatggagaccccgattgaccgaaacattggt
gaaagcagcgaaacctatcaaagcggcgactatttaaccataatgatagcctttgttaca
ggcgccttggtggtgattattgtcatatttgtcactgtgctgctgcgctgccgccacgcc
tccaggttcaaggctgcacagaggaaaaagcagggggctgagtggatgtcacccaacacc
gagaacaagcagaacaagaagaagaagcgcaagaaaaggaagtccccaaaaagctccctg
ctcaactttgtcaccatcgaggggaacaaacccgacgaccctgcgcacgagccgatcaac
ggaaccattagcctgcccaccgagctggaggagcaagggattggacgcttcgattggaat
gccacgcctaccacgaccttcaaacccagcagccctgacctggcccggcactacaagtcc
gcctcgccgcagtcggccttccacctcaaggccgacacgccggtctccgtgaagaagcat
cacgtgattcaggagctcccattggataacacatttgtcggaggctgtgacaccctttcc
aagaggtcctccacgagctccgaccacttcagtgcctcagaatgcagctcccaaggaggg
ttcaagacaaaggggccaatgcacaccagacagcagggaacattaacgcgcgcccgaact
gaactgaaccctgaatacctggacctccgtccgcgagctgagctgaaccctgaatattgg
accccttgcacccctttatcgcagcggcgcgtcacgtttcacctgccggatggctctcag
gagagctgcagtgacagcggtctgggggaccacgagcctgtaggcagtggctccctcctc
acacaacctctccctctggtgcaggcgcaggacgacttccacgagcaggcctcccccgat
aagaggaccgaagctgacggcaactccgatcccaactctgatggccccctgggacctcgt
ggcttagtggaagctacagagatgtgcacacaggaatgcttaatcctgggacattcagac
aactgctggatgcccccgacattgggaacataccagcagcccaagtcacccgtgtctagc
tttacgtctcagagggagtggggtcccaaggaaaaacttctcaatggacatactctaacc
agaacctggaaaaatgagagtgggcgatcagagcatttcggtgacaggaagcagtttggg
agcggagagggacacttcaccagcagtggcatggctgatattccgctggtgagtcttaag
tcctgccagccagcctcctgcccagacatcccgaaggaccatcagctataa
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