Pseudoliparis swirei (Mariana hadal snailfish): 130192887
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Entry
130192887 CDS
T09868
Symbol
irx5a
Name
(RefSeq) iroquois-class homeodomain protein IRX-5a isoform X1
KO
K24889
iroquois-class homeodomain protein IRX
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130192887 (irx5a)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
130192887 (irx5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Caps_assemb_Wzi
PGA2
Motif
Other DBs
NCBI-GeneID:
130192887
NCBI-ProteinID:
XP_056269055
LinkDB
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Position
4:complement(2609121..2613258)
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AA seq
484 aa
AA seq
DB search
MAYPQGYLYQPSASLALYSCPAYSTGVLSGPRTEELGRSSSGSAFAPYAGSTAFSSGASP
GYSSHLPYSADAAAAAAAAAAAATFTSYVVSKLKGSPYDHSTGMAGSIGYHPYAASLGSY
YGDPAYRKNATRDATATLKAWLGEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR
LKKENKMTWTPRNRSEDEEEDENIDLEKNDDDEPNKPTDNKGDSTDTEADHKLLDPGDAG
CDRFKEESLQGRDSDRPLSDSELKDPEERTTELLLLLPDSATPTTSSPSAGPRGSQASAC
AAAAAAAAALQQQDKPSDLSLASGAVPSNVTSVIHSPPSAPKPKLWSLAEIATSSDRCKS
SSTGGGGGGDAPQACPGLGQSNASPSRSSPQCALPNSTVLSRPLYYTSPFYPGYTNYGGS
FGHLHGSHGSVTTGSSSAHFNGLNQTVLSRAEALVRESQKVRSHTQVDVCKDSPYELKKG
MSHI
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatcctcagggctacttgtaccagccgtccgcgtccctggctctgtactcgtgc
ccggcgtacagcaccggcgtgttatcgggacccagaaccgaggagctcgggagatcctct
tcgggatccgcttttgcgccctatgccggatctaccgcgttcagcagcggcgcgtcgccg
ggctacagctcccacttgccgtacagcgcggacgcggcggcggcggcggcggcggcagcg
gcggcggccacgttcacctcgtacgtggtgagtaaactaaaggggtctccctatgaccac
tccacgggcatggccggctccataggataccacccttacgcagcgtccttgggctcctat
tacggtgacccggcgtaccgcaagaacgcgacgcgggacgccaccgccaccctgaaggcc
tggctgggcgagcaccgcaagaacccgtaccccaccaagggggagaagatcatgctggcc
atcatcaccaagatgaccctcacccaggtgtccacctggttcgccaacgcgcggcggcgg
ctcaagaaggagaacaagatgacctggaccccgcggaaccgcagcgaggacgaggaggag
gacgagaatatcgatttagagaagaacgacgacgacgagcccaacaagcccaccgacaac
aagggggactccacggacacggaagcagatcacaagctgcttgacccaggggacgccggc
tgcgaccggttcaaagaggagagcctgcagggcagagactcggatcggcctctgagcgac
tcggagctcaaagacccggaggagcggactaccgagctgctgctgctgctgccggactcc
gccaccccgaccacgtcgtctccctcggcggggccccgggggagccaggcctccgcctgc
gcagccgcagccgccgccgccgctgcgctgcagcagcaagacaagccgtcggacttgagc
ctcgcgtcgggtgcggtgcccagcaacgtgacctcggttatccactcgccgccttcggca
ccgaaacccaaactctggtccctcgcggagatcgccacgtcctcggacaggtgtaagagc
agcagcaccggcggcggaggcggcggcgacgcgccacaggcgtgcccgggtctgggtcag
agcaacgcgtctccatcgcggtcctccccgcagtgcgcgctccccaacagcacggtgctc
tccaggccgctgtactacacctcccctttctacccgggctacacgaactacggtggctct
tttggacatctgcacgggagccacggctcggtgaccacgggctcctcctcggcacatttc
aatggattaaaccagactgtgttaagtagagcagaggctctggtgagggagagccagaaa
gtcagaagccacacgcaggtagatgtttgtaaagactccccttatgaactaaagaaaggt
atgtcacacatttaa
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