Pseudoliparis swirei (Mariana hadal snailfish): 130192922
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Entry
130192922 CDS
T09868
Symbol
cul4a
Name
(RefSeq) cullin-4A
KO
K10609
cullin 4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03420
Nucleotide excision repair
pswi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130192922 (cul4a)
09124 Replication and repair
03420 Nucleotide excision repair
130192922 (cul4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130192922 (cul4a)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130192922 (cul4a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130192922 (cul4a)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
130192922 (cul4a)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
130192922 (cul4a)
TCR (transcription coupled repair) factors
Cul4-CSA complex
130192922 (cul4a)
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
130192922 (cul4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
Motif
Other DBs
NCBI-GeneID:
130192922
NCBI-ProteinID:
XP_056269095
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All DBs
Position
4:15938250..15946284
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AA seq
757 aa
AA seq
DB search
MAEDTRQDKRASFSAITEHNTNGMTRTSAVASSKSGASKKLVIKNFKDRPKLAENYTEDT
WLKLRDAVGAIQNSTSIKYNLEELYQAVENLCSYKVSPTLYKQLRQVCEDHVQAQIKQFR
EESLDNLSFLKRMNRCWQDHCRQTIMIRSIFLFLDRTYVLQNSLLPSIWDTGLELFRTHI
VSDSAVQKRTVDGILEQIELERNGETVDRSLIRSLLGMLSDLQVYKDSFEERFLLETNRL
YAAEGQRLTQERDVPEYLHHVAHRLEEENDRIMSYLDQSTQKPLVSCVEKQLLGEHITAM
LQKGLKILLDENRVAELALLYQLFSKVKGGLPTLLQFWRDYIKSFGGEIVCTPEKDKDMV
QELLDFKDKMDNVAQSCFTRSEGFINTMKEAFENFINKRPNKPAELIAKYVDSKLRAGNK
EATEEELERILDKIMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHE
CGAAFTSKLEGMFKDMELSKDIMIQFKQYIQNQSEQSNIELTVNILTMGYWPSYIPMEVH
LPPEMVKLQEVFKLFYLSKHSGRKLQWQPTLGHAVLKAEFKEGKKELQVSLFQTLVLLMF
NEGEEFSMEEIRAATGIEEEELRRTLQSLACGKARVLNKNPRGKDVEDGDRFNFNNDFKH
KLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAVVRIMKMRKTLSHNLLVSELYNQ
LKFPVKPGDLKKRIESLIDRDYMERDKETPNQYHYVA
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggacacccgacaggacaagagagccagcttctccgctataacggagcacaac
accaacgggatgaccaggacctccgctgtggcctcgagcaaaagtggcgcctcaaagaaa
ttagtgatcaagaatttcaaagacaggccaaaattagcagaaaactacactgaggacacg
tggctgaagctacgagacgcagtgggtgccatccagaacagcacctctatcaagtacaat
ctggaggagctctatcaggcggtagaaaacctctgttcatataaagtctcgcccacgctg
tacaagcagctacgtcaggtctgtgaagatcacgtgcaggcccagatcaaacagtttaga
gaagagtctttggacaacctttccttcctgaagcgaatgaatcgctgctggcaggaccac
tgcaggcaaacaataatgatccgcagtatctttctcttcttggatcgtacctatgtgctt
cagaactccctgctcccctccatctgggacactgggttggaattgtttcgtacccacatt
gtgagcgacagtgcagttcagaagcgcacagtagatggcattctggagcagatcgagctg
gagcgaaacggagagacggtagaccgaagtctgatcaggagcctcctgggcatgctgtca
gacctacaggtttacaaagattcctttgaggagagatttttgcttgagaccaatcgcctg
tatgcagcagagggacagcgattgacgcaggagagagatgtgcctgagtacctgcaccat
gtggctcatcggttggaggaggagaatgatcgtatcatgagctacctcgaccagagcact
cagaagccgctcgttagctgtgttgagaaacagcttttaggagaacacattactgcaatg
ctacaaaaagggctgaaaatcctgctggatgagaatcgagtggctgagctggccctcctc
taccagctcttcagcaaggtgaagggaggactccccacgctgctgcagttctggagagat
tacataaagtccttcgggggagagattgtatgtaccccagagaaggacaaggacatggtg
caagaactgctggactttaaggacaagatggacaacgtggcacagagctgctttacgcgg
agtgagggattcatcaacaccatgaaggaggcctttgagaacttcatcaacaagaggccc
aacaaacctgctgaactgattgctaagtatgtggattcaaagttaagagccgggaacaaa
gaggctacagaggaggagctggagagaatcctggataagatcatgataatcttccgtttt
atccacggaaaagatgtgtttgaagctttttataagaaggacttggcaaagcgtctgctc
gtcggcaagagtgcatctgttgacgctgaaaagtcgatgctctccaagctcaaacacgaa
tgcggagcagcatttaccagtaagctagaggggatgttcaaggacatggaactgtccaaa
gacatcatgatccagttcaaacagtatatacagaaccaaagcgagcaaagcaacatagaa
cttactgtcaacatcctcacgatgggctactggccttcgtacatacccatggaagtccac
ttgcccccagagatggtaaaactccaggaggtgtttaagctgttctacctgagcaagcac
agtgggaggaagctgcagtggcagcccacactgggccacgctgtgctgaaggcggagttt
aaagagggtaagaaggagctgcaggtctcgctgttccagacgctggtgctgctgatgttt
aacgagggagaagaattcagcatggaggagattcgcgctgccactggcatagaggaggaa
gagctcaggcgcactctgcagtccctggcctgtggaaaagcacgcgtcctcaacaagaac
cctcgagggaaagacgtggaagatggagatcgtttcaatttcaacaatgattttaaacac
aaactgttccgcataaaaatcaaccagatccagatgaaggaaacggtagaagagcaggtc
agcaccacagagcgtgtgtttcaagaccggcagtatcagatcgatgccgccgtggtgcgc
atcatgaagatgaggaagaccctcagtcacaaccttctggtatcggagctctacaaccag
ctgaagttccctgtaaagccgggtgatctgaagaagcggatcgagtcgctcatagacaga
gactacatggaacgtgataaggagacgcctaaccagtaccactatgttgcctga
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integrated database retrieval system
