Pseudoliparis swirei (Mariana hadal snailfish): 130193012
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Entry
130193012 CDS
T09868
Name
(RefSeq) lymphocyte-specific protein 1-like isoform X1
KO
K12327
caldesmon
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
130193012
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pswi04812
]
130193012
Cytoskeleton proteins [BR:
pswi04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Others
130193012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caldesmon
Motif
Other DBs
NCBI-GeneID:
130193012
NCBI-ProteinID:
XP_056269280
LinkDB
All DBs
Position
4:33231720..33254612
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AA seq
522 aa
AA seq
DB search
MSESIRRKSSSRELLQNLISVTAQRSQEDAEEVEREQRRRARETQRGEGSPPRPEPPRRH
DTPRHDMPSNETPRHDTPRHDTPRHDTPSNEMPHNTAPDEELKPRSRLVLEEDEGFSDWS
HRLENRGEQEVQKERRAGLQRPTRRKPRPEEEQRQEGGEEVKEEEEEGCRSQEASTRPSE
KVSIDGKEVKTTYSSKVFLSHDARPPHAADRTSHLVAGTMRPRGGACRVDGEAQQEVHQE
VYQEAQQEAQAAEQRQPHRAPPRDEDDQEEEEKEDLHLTREEKHREEEEEQQEEQQEEPR
MPDKSWMESSRRSSRRSEEGNPADEDEEPVNYGPMSPTFKKLLIQFYPEEVTHRAATDAK
CSIMERTESLRRSGGSVKKTLTPVAVSKIDKKLELYAHALQVSTQEGRSAGQAPADLASP
TEPVSSKKSLFEAGEARSHTAATPSKDADGVKVGVANLINQWVRGGEDGSRCSSPSRPAE
NSSGKKHKFLVTGHGKYQKVPVDRDCSEEAGCSPAGAFCEDL
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagtccatcaggaggaagagctccagcagggagctcctgcagaacctcatcagc
gtgacggcccagcggagccaggaggacgccgaggaggtggagcgggagcaaaggaggaga
gcccgggagacgcagaggggagaggggagccccccgaggccggagcccccccgccgccac
gacacgccgcgccacgacatgccgagcaatgagacgccgcgccatgacacgccgcgccac
gacacgccgcgccacgacacgccgagcaacgagatgccacacaacacggcgccggacgag
gagctgaagccccggagccgcctggttctggaggaggatgagggcttcagcgactggagc
caccggttggagaatcgcggtgagcaggaggtgcagaaggagcgccgggccgggctgcag
agacccacgaggaggaaaccacggcctgaggaggagcaacggcaggagggcggagaggag
gtgaaggaggaggaggaggagggatgtcggtcacaggaagcttcgacgagaccttcagag
aaggtctccatcgacggaaaggaagtcaagacgacctacagctccaaggtcttcctgtca
catgacgcccggccgccgcacgccgcggacaggacgtcccacctggtggccgggaccatg
aggccgcgcggcggggcctgcagggtggatggggaggcgcagcaggaggttcaccaggag
gtttaccaggaggcgcagcaggaggcgcaggctgctgagcagaggcagccacatagagct
ccccccagagatgaagatgaccaggaggaagaagagaaggaagacctccatctcacgagg
gaggagaagcacagagaggaggaggaggagcagcaggaggagcagcaggaggagcccagg
atgccagataagagctggatggagagcagcaggaggagcagcaggaggagtgaggagggg
aacccggctgatgaagacgaggagccggtgaactacggccccatgagccccacattcaag
aagctgctcattcagttctaccccgaggaagtgacccaccgcgccgccacggacgccaag
tgctcgatcatggagcggaccgagtctctgaggaggagcggcggcagcgtgaagaagacg
ctgacgcccgtcgccgtttccaagatcgacaagaagctggagctgtacgctcacgccctg
caggtctccacgcaggaaggcaggtcggcgggtcaggcgccggcggacctggcgagtccc
accgagcccgtctcctccaagaagagcctgttcgaggccggagaggcccggagccacacc
gccgccacgccgtctaaggatgcagacggtgtcaaagtgggcgtggctaacctgatcaac
cagtgggtgagaggaggtgaagacggcagcaggtgcagctcgccctccagacctgcggag
aactcctccgggaagaaacacaagttcttggtgacgggacacggaaagtaccagaaggtt
cctgtggaccgggactgcagcgaggaggccggctgctcgccagctggagcgttctgtgaa
gacttgtga
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