Pseudoliparis swirei (Mariana hadal snailfish): 130193044
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Entry
130193044 CDS
T09868
Symbol
caprin1a
Name
(RefSeq) caprin-1a isoform X1
KO
K18743
caprin-1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130193044 (caprin1a)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
130193044 (caprin1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caprin-1_C
Caprin-1_dimer
DUF1940
BCL_N
Motif
Other DBs
NCBI-GeneID:
130193044
NCBI-ProteinID:
XP_056269334
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Position
4:complement(13661798..13671886)
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AA seq
635 aa
AA seq
DB search
MPSMMIGNNAVQSAIPDLGNGNNSEAIKQVLAVIDKKVRNMEKKKSKLDDCQTRKVNGEQ
LNQDQLDSLTKYQEIANNLDFARELQKSFLALGQEIQKAVKKTARREQLQREEMDHQRLK
TVLEFQFVLDQLGDENIRQDLKRPDATGSPLLTDTDLTSLDELYKLVGPDRNYDVRLTGQ
YEEASVHLLELFEGRDKAVAGTTYKSLKDTLDKVLLSGYFDRAQTHQNGTCVEEEEQDEQ
TVGTESMAGKQPSEPEGTATEKYIEPIQVETTEFVNRQFIPEAMYSSTDKVQVEKWAVEA
QMVNSLQHQPPAQLATEPAVTVNHGTPPTAADPVVRKQVVHDLMAQMQGTYNFIQDSMLD
FDGQALDPAIVSAQPMKPLQTLDLQQMGCPSTHSKSRLPQTSAVSPQESSQVSMSLSSDQ
SPTPCSLSSAFPPVSKSTHTGGINVNAAPFQSVQAVFNLNAPVPPATDGQADPLKQPSQF
PGGYGQGFSSQSESTGDQPDIPQDTLQSVVAGFQPQDHVLPAAGGHEESSPGAGFGQPGQ
SFYNSRAVPRGGPRNGRGMMNGYRGSSNGFRGGYEGYRPPFSNAPSGGYGQTQFNTSRDY
SNNTYQREGYQQNYKRGSAQGPRSLSRGNAQAMRS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaatgatgattggcaacaatgctgtccagtctgccattccagacctgggaaat
ggaaataattctgaggccattaaacaggttcttgctgtgattgataagaaagttcgcaat
atggaaaagaaaaagtccaaactcgatgactgtcagacaaggaaggttaatggagaacaa
ctgaatcaggatcaactggattccttgacgaagtaccaagagattgccaacaaccttgac
tttgcacgagaactgcagaaaagcttcctggcattgggtcaagagattcagaaggcagtg
aagaagactgcgagacgggagcagctgcagcgggaggagatggatcatcagcggctgaag
actgttttggagtttcagtttgtactggaccagttgggagatgagaatatcagacaggac
ctgaaacgacctgacgccactggttccccattgctcactgacactgacctcacatccctt
gatgagttgtacaaactagtgggacctgataggaactatgacgtcaggttgactggccaa
tatgaagaggcctcagtccacttgttggaactatttgagggtcgagacaaggctgtggca
gggaccacatacaagtcactgaaggacactctggacaaagtgctgctgagtggttacttt
gacagagcacaaactcatcagaatgggacatgcgtggaggaagaggaacaagacgagcag
actgtggggactgagtctatggctgggaagcagccatcagaacctgaaggaacggctacg
gaaaaatacatagagccaattcaagtagaaaccacagagtttgtaaacagacagttcatt
ccagaagctatgtacagtagtacagacaaagtccaagtggagaagtgggcagtggaggct
cagatggtgaattccctccagcaccagccccctgcccagctggctacagagccagccgtt
accgtgaaccatggcacccccccaactgctgctgacccagtggtcaggaagcaggttgtg
catgacctcatggcccaaatgcaagggacgtacaacttcatacaggactccatgttggat
tttgacggccaggctctggacccagccatcgtgtccgcccagccgatgaagcctctgcaa
actcttgacctgcagcagatgggctgcccttcaacccactcaaagtccagacttcctcaa
acaagtgcagtgtctccacaggaatcctcacaagtctcaatgtctctctcgtctgaccag
tctcccaccccatgttccctgtcctctgctttcccacctgtctccaaatccacccatact
ggaggcatcaatgtcaatgccgcacccttccagtcagtgcaagcggtatttaatctgaac
gcacctgtacctccagccactgatgggcaagcggatcctctgaagcagcccagccagttc
cctggtggctacggtcagggcttcagcagccaatcggagagtactggagaccagcctgac
atcccacaggacacattacagtcagttgttgctggcttccagccccaagaccacgtcctg
cccgcagcaggaggccatgaagagtcctctccaggcgcaggctttggacagccaggccag
tctttctacaacagcagggccgtgcccaggggggggcccaggaacggccggggcatgatg
aacggatatcggggctcctccaatggatttcgagggggatatgaaggctatcgccctcct
ttctcaaatgctcccagcggtggttatggtcaaacccaattcaatacgtctcgagactat
tccaacaacacctaccaacgggagggatatcagcaaaactacaagcggggatcggcccaa
ggaccacgaagtttgtcaagaggaaatgctcaagcaatgagatcctaa
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