KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130193148
Entry
130193148         CDS       T09868                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    130193148 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pswi03400]
    130193148 (tdp1)
DNA repair and recombination proteins [BR:pswi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     130193148 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 130193148
NCBI-ProteinID: XP_056269512
LinkDB
Position
4:19806291..19813637
AA seq 617 aa
MSQDSHHGRWNISSSDDDDEAVPLSGTTTSESRRPAASGESSHRPPSPRSPRLEAATVDV
KPEPANAPVSSLAVGSETERPASTDQLTPSKYETSPSLAGKRKKEALDGSGWALSDSDDD
DIDVKGKSLGMRAPPSPKTKKPKVETERPPSPHGRVYYIDEPEDFFESSIPRLSDKYRFY
LNKVTGLDKKYNSGALHIRDILSPLFGTLKESAQFNYCFDIAWMVKQYPSEFRDCPVLIV
HGDKREAKARLLLQAKPFPHIHFCQAKLDIAFGTHHTKMMLLWYEEGFRVIILTSNLIRA
DWYQKTQGMWMSPVFPRLPEGSDESAGESPTFFKRDLLEYLASYRASELEVWIRRIGEHD
LSEARVYLVGSTPGRYLGSDMERWGHLRLRKLLYDHTDPVPREESWPVIGQFSSIGSMGL
DKTKWLTGEFQRTMTTLGKSSLRSDPPMHLVYPSVEDVRTSLEGYPAGGSLPYSIQTAQK
QLWLHSFFHRWKATATGRSHAMPHIKTYMRASPDFTQLAWFLVTSANLSKAAWGAMEKKN
TQVMVRSYELGVLYVPSAFDMKTFPVHKSQFPASDSTGFPVPFDLPPTCYSPKDQPWIWN
IPYSHAPDTHGNVWVPS
NT seq 1854 nt   +upstreamnt  +downstreamnt
atgtctcaggacagtcaccacggcaggtggaacatctccagcagtgatgacgatgacgag
gctgtccctctctctgggactacaacatctgagtcccgccgacccgctgcatccggtgaa
agctcccatcgacccccttccccacggagccccagactggaagcggccactgtggacgtg
aaaccagaaccagctaacgcccctgtgtcctcgctcgccgttggctcagagaccgaacga
ccggcatcgacagaccagttgactccttcgaagtatgaaaccagtccgtcgttggctgga
aagcggaagaaagaggcgttggacggctcaggctgggctctctcggatagcgacgatgat
gatatagatgtgaaggggaagagcctcggtatgagggcccctccgagccccaagacaaag
aaacccaaggtggagactgagcgacccccgagtccccacggtcgcgtctactacatcgac
gagccagaggacttctttgagtccagcattcctcgtttgagtgacaaatacaggttttac
ctcaacaaagtcacaggtctggacaagaagtacaacagtggggctctgcacatcagagac
attctctcgccattatttgggaccctgaaagagtctgctcagtttaactactgctttgat
attgcctggatggtcaagcagtacccatcagagtttcgggattgtccagttctgatcgtc
cacggagataagagggaggccaaggcccggctactcctgcaggcgaagccttttccccat
attcacttctgtcaggccaagctggatattgcttttggaactcaccacacgaagatgatg
ttgctgtggtacgaggaaggtttcagggtcataattctgacctctaacctcatcagagcc
gactggtaccagaaaacacaagggatgtggatgagccccgtgtttccacggttaccagag
ggcagcgatgagagtgcgggggagtctccgaccttcttcaagagagacctgctggaatac
ctggcgtcgtaccgtgcgtcagagctcgaggtgtggatccggcgaatcggagagcacgac
ctgtcggaggccagggtttatttggtcggctcaaccccagggagatatctcggctcggac
atggagcgctggggccacctgaggctaaggaagttgctgtatgaccacacagatcctgtt
ccccgggaggagagctggcctgtgattggccagttttccagcatcggctccatgggactg
gataagaccaaatggttgacgggtgaatttcagcgcaccatgaccacgctgggaaaatct
tcactccgctcagacccccccatgcacttggtgtatccatcagtggaagacgtgagaact
agtttagaaggctatccagcgggaggctctcttccctacagcatccagacggctcagaaa
caactctggctccactccttcttccatcgttggaaagccactgcaacagggaggagtcat
gccatgccacacatcaagacctacatgagagcatcaccagatttcacccagcttgcctgg
ttcctcgtcacaagtgccaacctgtccaaagcagcctggggagcaatggaaaagaagaac
acccaggtgatggtgcgttcatacgagctgggagtcctctatgtgccctctgccttcgac
atgaagaccttccccgttcacaaaagtcaatttcctgcctccgactccactggtttccct
gtgccctttgacctcccccccacatgctactctcctaaagatcagccttggatctggaac
atcccgtacagccatgctcccgacacacatggcaacgtctgggttccctcctga

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