Pseudoliparis swirei (Mariana hadal snailfish): 130193176
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Entry
130193176 CDS
T09868
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03022
Basal transcription factors
pswi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130193176 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
130193176 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130193176 (ercc3)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130193176 (ercc3)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130193176 (ercc3)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
130193176 (ercc3)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
130193176 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
AAA_2
Motif
Other DBs
NCBI-GeneID:
130193176
NCBI-ProteinID:
XP_056269563
LinkDB
All DBs
Position
4:complement(17957111..17964317)
Genome browser
AA seq
780 aa
AA seq
DB search
MGKKDKGDRDKKSKKRFYEEEEEEEEVVGSESQEAIPAAAGKHVEESSTKLDEYGAKDYR
IQMLLKNDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFMVAIAEPVCRPNHIHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTMSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDPVIRDCRLRTADGADTELITEVIQSKSLISKPIEEKGSTSTSQQPGDGQTL
TQPVPDDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQTEYPLLAEYDFRND
TVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAEKVMEWMRSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKMGLTATLVREDDKIVDL
NFLIGPKLFEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVSIKTKKRILFYTMNPNK
FRACQFLIRFHERRNDKIMVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSTKDEQQQLLQKVLAAS
DLDAEEELVAGEVGGRPQFSRRTGTMSSMSGADDTVYMEYRGSKASLGKNIHPLFKRFRK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaaagataaaggagatcgggacaagaagtccaaaaagcgtttctatgaggag
gaagaagaggaagaagaagtagtgggcagcgagtctcaggaggccatacctgctgctgca
gggaaacatgtggaggagtccagtacaaaactggatgagtatggtgccaaagactaccgt
attcagatgctgttaaagaatgatcacacttcacgccccctttgggtggctccagatgga
cacatcttcctggaagccttctcaccagtgtacaagtacgcccaggatttcatggtggcc
attgccgagccagtgtgcaggcctaaccatatccacgagtacaagctgacagcatattcc
ctgtacgcagcggtcagtgtggggctgcagacctctgatattgtagaatacctgcagaaa
ctcagcaagacgtcagtacctgatggaatcgtgcagttcattaagctctgcacaatgagc
tatggcaaagtcaagctggtgctcaagcacaataggtattttgttgagagtgccttcccg
gatgtgatccagcggcttctgcaggaccccgtgatccgtgattgtcgtctccgcactgca
gacggagcggacactgagcttattactgaagtcatccagagcaagtcattgatttccaag
cctattgaagaaaagggaagcacttctacctcacagcagcctggcgatggacaaacttta
acccagccggtgcctgatgacatcttcagctactatgagcagatggataaagaagaagag
gaggaggaagagactcagactgtgtcttttgagatccgccaggagatgatcgaagagctg
cagaagcgttgtatccagacggagtaccccctcctagccgagtacgactttcgcaatgac
acagtcaacccggacatcaacattgacctgaagcccactgctgtgctgcggccctatcag
gagaagagtttgcgcaagatgtttgggaatggacgtgctcgctctggggtcatcgtgctg
ccctgcggagcgggaaaatccctggtgggcgtgacagcggcttgcacagtgcgtaaacgc
tgcctggtgctggggaactcctcggtgtcagtggagcagtggaaggctcagttcaagatg
tggtccaccatcgatgactctcagatctgccgcttcacctcagacgccaaggacaagccc
atcggctgctcagtagccatcagcacctactccatgctgggccacaccaccaagcgctcc
tgggaggccgagaaagtcatggagtggatgcggagccaggagtggggactcattatcctg
gatgaggtgcacactatccctgccaagatgtttcgtcgggttctgaccattgtccaggca
cattgcaaaatggggctcactgccacactggtcagggaagacgacaagattgtggacctg
aatttcctaattgggccgaaactatttgaggccaactggatggaattgcagaacaatggc
tacattgccaaagtccagtgtgcagaggtgtggtgcccgatgtctccagagttttacagg
gagtacgtgtccatcaagacgaagaagcgcatcctgttttatacaatgaaccccaataag
ttccgcgcctgccagtttctcatccgcttccacgagcgtcgtaatgacaagattatggtc
tttgctgacaacgtgtttgccttgaaggagtacgccattcgcctcaacaagccttacatc
tatggtccaacttctcagggggaacgaatgcagattttacagaacttcaaacacaacccc
aaaatcaacaccattttcatctccaaggttggagacacctcgtttgacctgccagaagcc
aatgttctgattcagatctcctctcatggcggctcacgtcgacaggaggcccagaggctt
ggcagagtcttacgagctaagaaaggaatggtagcagaggagtacaacgcatacttctac
tcgctggtgtcccaggacacccaggagatggcttactccaccaagaggcagaggttcctg
gtggaccaaggttacagctttaaggtgatcacaaagttggctggtatggaggaagaggac
ctaatgttctccacaaaagatgagcaacagcagctgcttcagaaggttctagctgcttca
gacctcgacgctgaggaggaattggtggcaggggaggttggcggacgaccacagttctcc
aggcgaacagggaccatgagctccatgtcgggtgcagatgacaccgtctacatggaatat
cgaggcagcaaagcctcattaggcaagaacattcatcccctgttcaagcgcttcagaaag
tag
DBGET
integrated database retrieval system
