Pseudoliparis swirei (Mariana hadal snailfish): 130193216
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Entry
130193216 CDS
T09868
Name
(RefSeq) homeobox-containing protein 1-like isoform X1
KO
K24885
homeobox-containing protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130193216
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
130193216
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
HTH_31
DUF494
HTH_26
HTH_24
CUT
HTH_37
Motif
Other DBs
NCBI-GeneID:
130193216
NCBI-ProteinID:
XP_056269630
LinkDB
All DBs
Position
4:19814602..19830014
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AA seq
509 aa
AA seq
DB search
MFQQCEEPRFTIEQIDLLQRLRRTGITQTEVLHALDTLEHLDRKHGQKLYHKPPYMPPCS
SLSSSSAGVASSSMTSTATQTSFPNNRLSLSPSNHFDTASPPPPIPVASPVTMAAVVQNG
LAAVTNGKLSPPRFPLGVAAPVYGFETNEEDIDVDDKVEDLLRRDSAVIKEEIKSFLANR
RISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFFRWYQLEKTNPGATLAMRVAPVA
LEDVMDWQQAPPPFGLAPGGFRLRRGSRFTWRKECLAVMESYFIDHQYPDEAKREEIATA
CNAVIQKPGKKLSDLERVTSLKVYNWFANRRKDIKRRANIEAAILESHGIEVQSPGGQSN
SDEVDGNDFPDQGCEVSLFDKRASAKQFGFSRADLSSPTQVPTLLPSWFSVLSRGGLSGQ
RGTSLIGRSHVSGAVPQVEGSRLTGVSWSPPSPSLQDEATIHSVLSEPQDPIGLEKAAVN
HSSHALANQVDGPGCSIGNDIKTETLEDD
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgttccagcagtgcgaggagcctcgtttcaccatcgagcagatcgacctcctgcagagg
ctaaggaggaccggcatcacgcagacggaggtcctccatgccctggacacgctggagcac
ctggatcgcaaacatggacagaagttgtaccataagcctccctacatgcctccctgctct
tccttgtcctcctccagcgccggcgtcgcctcctcctccatgacttccacggccacccaa
acaagtttcccaaacaaccgactctcgctgtcgcccagcaaccacttcgacaccgcctcc
ccacctccgcccatcccagtggcatcgccggtcaccatggcggcggtggtccagaacggc
ctggctgccgtcaccaacgggaagctgtcgccgccccggttccctcttggcgtggcggca
ccggtctacgggtttgagaccaatgaagaggacatcgatgttgatgacaaggtggaggac
ttgctgaggagggacagtgctgtgatcaaagaggagattaagtccttcctggcaaacagg
cggatctcccaggccgtggtcgctcaggtaacggggatcagtcagagccggatctcccac
tggctcctgcagcagggatccgacctcagcgagcagaagaaacgggccttctttcgctgg
taccagctggaaaagaccaatcccggtgccactctggccatgcgagtcgccccagtggcc
ctcgaggacgtgatggactggcagcaagccccgcctccgttcggcttggcccccgggggc
ttccgtctgcggcgggggagcaggtttacctggaggaaggagtgcctggctgttatggag
agctacttcattgaccaccagtaccctgatgaagcaaagagagaggagattgccaccgcc
tgcaacgccgtcattcagaaaccaggaaagaagctgtcagatttggagagagttacgtct
ctgaaggtctacaactggtttgccaaccgccgcaaagacatcaagaggcgcgccaacatt
gaagcagccatcttggagagccacggcatcgaggttcagagtccaggcggtcagtccaac
agcgacgaggtggacggcaacgacttccctgaccagggttgcgaggtgtccttatttgac
aagagagcttcagccaagcagtttggtttcagtcgagctgacctgtcctctccaacccag
gtacccacgctgctgcccagctggttttctgtcctgagcagagggggcttgtctggacag
aggggcacctccctgattggccgctcccacgtgtcaggggcggtccctcaggtggaaggt
tccaggttgacaggcgtgtcctggtctcccccgtcgccctccctccaggacgaagccacc
attcacagcgtgctgtccgagccccaggacccaatcggtttggagaaggcggctgtcaac
cacagcagccacgccctggccaatcaggtggacgggccagggtgcagtatcgggaatgac
atcaagacggaaacgctggaggacgactga
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