Pseudoliparis swirei (Mariana hadal snailfish): 130193253
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Entry
130193253 CDS
T09868
Symbol
ppfia1
Name
(RefSeq) LOW QUALITY PROTEIN: liprin-alpha-1
KO
K26226
liprin-alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
130193253 (ppfia1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130193253 (ppfia1)
Membrane trafficking [BR:
pswi04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
130193253 (ppfia1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIP-1
SAM_1
SAM_2
Flagellin_C
Motif
Other DBs
NCBI-GeneID:
130193253
NCBI-ProteinID:
XP_056269677
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All DBs
Position
4:34023444..34056889
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AA seq
1200 aa
AA seq
DB search
MMCEVMPTISEADGGRRGSGSPLQSDSEGHFESLMVSMLEERDRLLETLREAQENLGSTQ
GKLHEVSHERDALQRQLHAALPQEFAALTKELNNTRLLLEHLECLVSRHERSLRMTVVKR
QAQSPAGVSSEVEVLKALKSLFEHHKALDEKVRERLRVALERCSALEEQLTMTHKELSYL
REQSGLKRGLADGTSEVNHTSESTPSTNGKRSSGGSLSQEEDPGLGFGSVGELQDVVDRQ
TADLGQMKERMAAMVARINELEEDLDAARKDLIKSEDMNTRLQRDLRESVAQKEDMEERI
TTLEKRYLSAQREATSVHDLNDKLENEVANKDSLCRQTEDRSRQLQEKLELAEQKLQQTI
RKAETLPEVEAELAQRVAALTKAEERHGNVEERLRQLEAQLEEKNQELLRARQREKMNEE
HNRRLSETVDKLLSESNERLQLHLKERMSALEDKNSLIRELEHTKKLIEESHHEKEQLLI
QMEPRTMRAERASGRGRNFAARVSRGRSQLGGTPDFRYPVSASSMMDSSSDQYGSGLVLR
RPQKGRTAALRDEPSKVQTLNEQEWERMQQASVLASVAQAFEGELEASDLEDEALFGSVD
LLSPGGQADAQTLALMLQEQLDAINNEIRMIQEEKENTAIRAEEIEYRVGDGLGGHYRST
GSIPPSLGGSPPGSGGSTPRRVPRSPNRELDCMGVMTLPSDLRKHRRKDDKASVHCETSP
PSTPRSMRLSREAGHTASHEDIRDLRGLAGLQDPGSDPSSSSSSQDSLNKAAKKKSIKSS
IGRLFGKKEKGQPPAKEAQAGTPEAESAPKDGLGEKNRKLQKNPKTGHELLEEARMQGLP
FAQWDGPTVVVWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKL
RLAIQEIMSLSSPSAPPTSRPTTGNVWLTHEEMERLAATPPTEDDEGSWAQTLAYGDMNH
EWIGNEWLPSLGLPQYRSYFMESLVDARMLDHLTKKDLRGQLKMVDSFHRNSFQCAVMSL
RRLNYDRKELERRREASLLDLQEVLVWSNERVVSWIQAIGLKEYSVHLSESGMHGALLAL
DETFDHNALALLLQIPTQNTQARAALEREYNVLLAIGTDRRTEEDDDKNFHRAPSWRKKF
RPKDMREMSLGASDTLPANFRVTGGGAGSPSPQPKRSPMEGSWCEEEEDEFPAFKTRMMN
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgcgaggtgatgcccaccatcagcgaggccgacggggggcggcggggctccggc
tccccgctgcagtccgactccgagggccactttgagtccctgatggtgtccatgctggag
gagcgggaccgcctgctggagaccctcagggaggcccaggagaacctgggctccacccag
gggaagctgcacgaggtcagccacgagagggacgcgctgcagcggcagctccacgccgct
ctgccccaggagttcgcggcgctgacgaaggagttgaacaacacacggctgctcctggag
cacctggagtgcctggtgtctcgccacgagcgcagcctgaggatgacggtggtgaagagg
caggcgcagtcgcccgccggcgtgtccagcgaggtggaggtgctcaaggccctcaagagc
ctgttcgagcaccacaaggccctggacgagaaggtgagggagcgtctccgcgtggctctg
gagagatgcagtgcgttggaggagcagctcaccatgacgcacaaagagctgtcgtacctc
cgggagcagagcggcctgaagagaggcctggcagacgggaccagtgaggtcaaccacacc
tccgagagcacgcccagcaccaacggaaagcgctcgtccggcggctccctgagccaggag
gaggacccgggtctgggcttcgggtctgtgggggagctgcaggacgtcgtggaccggcag
acggccgacctgggccagatgaaggagcgcatggccgccatggtggcacgcatcaacgag
ctggaggaggacctggacgcggcccgcaaggacctcatcaagtctgaagacatgaacacc
cggctgcagagggacctgagggagtccgtggcccagaaggaggacatggaggagaggatc
accaccctggagaagcgctacctgtccgctcagcgtgaggcgacctccgtccacgacctc
aacgacaagctggagaacgaggtggccaacaaggactctctgtgcagacagactgaggac
cgcagccgccagctccaggagaagctggagctggcggagcagaagctgcagcagacgatc
cgcaaggcggagacgctcccggaggtggaggcggagctcgctcagagggtggcggccctc
accaaggcagaggaacgccatggcaacgtggaggagaggctgaggcagctggaggcccag
ctggaggagaagaaccaggagctgctcagggcgcgtcagagggagaagatgaacgaggaa
cacaaccggcgtctctctgagacggtggacaagctcctctcagagtccaacgagagactc
cagctgcacctcaaggagcgcatgtctgccctggaggacaagaactccctgatcagagag
ctggagcacaccaagaagctgatcgaggagtctcatcacgagaaggagcagctcctgatc
cagatggagccaaggaccatgcgggcggagagagcgtcagggcgggggcgaaacttcgct
gcacgggtgagccggggccgctctcagctgggcggcactccagacttccggtacccggtg
tcggcgtcctccatgatggacagcagctccgaccagtacggcagcggcctggtgctgcgg
aggcctcagaagggccgcacggcggcgctgagggacgagccctccaaggtgcagaccctg
aatgagcaggagtgggagcgcatgcagcaggccagcgtcctggccagcgtggctcaggcc
ttcgagggcgagctggaggcgtcggacctggaggacgaggcgctgttcggctcggtggac
ctgctgtcccccgggggccaggccgacgcccagacgctggccctcatgctgcaggagcag
ctggacgccatcaacaacgagatcaggatgatccaggaggagaaggagaacacggccatc
cgggccgaggagatcgagtaccgggtgggcgacggcctggggggccactaccgctccacg
ggctccatccccccctcgctgggcggctccccgcccggctccggaggctccacccccaga
cgggtcccccgcagccccaacagagagctggactgcatgggggtcatgaccttgcctagc
gacctgcgcaagcaccgcaggaaggacgacaaggcctccgtccactgtgagacgtctccg
ccctccacgccgcgctccatgcgcctgagccgggaggcggggcacaccgccagccacgag
gacatccgggacctccgcggcctggcgggcctgcaggacccgggcagcgaccccagcagc
agcagcagcagccaggactccctgaacaaggcggccaagaagaagagcatcaagtcctcc
atcgggcgcctcttcggcaagaaggagaagggccagccccccgccaaggaggcgcaagct
ggcaccccggaggcagagagcgccccgaaggacggcctgggggagaagaacaggaagctg
cagaagaatcccaagacggggcatgaactcctggaggaagctcgcatgcagggcctcccc
ttcgcccagtgggacgggcccacggtcgtggtgtggctggagctgtgggtgggcatgccg
gcctggtacgtggcggcgtgccgcgccaacgtgaagagcggcgccatcatgtcggcgctg
tcggacacggagatccagagagagatcggcatcagcaacccgctgcaccgcctgaagctg
aggctcgccatccaggagatcatgtccctcagcagcccgtcagccccgcccacctccaga
ccgaccacaggaaacgtgtggctcactcatgaagaaatggagcgcttggcagccacgcct
cccacggaggatgacgagggcagctgggcccagacgctggcctacggagacatgaaccac
gagtggatcggtaatgagtggctgcccagcctgggcctgccccagtaccggtcctacttc
atggagtcgctggtggacgcccgcatgctggaccacctcaccaagaaggacctgcgaggc
cagctcaagatggtggacagcttccacaggaacagtttccagtgcgccgtgatgtctctg
aggaggctgaactacgacaggaaggagctggagaggagacgggaggcgtccctgctggac
ctccaagaggtcctggtgtggagcaacgagcgcgtggtcagctggattcaggccatcggg
ctgaaggagtacagcgtccacctctctgagagcggcatgcacggggcgctgctcgccttg
gacgagaccttcgaccacaacgcgctggcgctgctgctgcagatccccacgcagaacaca
caggcccgagcggctctcgagcgtgaatacaacgtccttctggccatcggcaccgaccgg
aggacagaggaggatgacgataagaacttccatcgagctccctcatggaggaagaagttc
aggcccaaagacatgagggagatgtctctgggggcgtccgatactctgcccgccaacttc
cgggtgaccggcggcggcgcggggtctccctccccccagccaaagaggagcccgatggaa
ggtagctggtgtgaggaagaggaggatgagttcccagccttcaagacccggatgatgaac
tga
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integrated database retrieval system
