Pseudoliparis swirei (Mariana hadal snailfish): 130193255
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Entry
130193255 CDS
T09868
Name
(RefSeq) intermembrane lipid transfer protein VPS13C-like
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130193255
Membrane trafficking [BR:
pswi04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
130193255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_M
VPS13_C
VPS13_VAB
VPS13_N
Motif
Other DBs
NCBI-GeneID:
130193255
NCBI-ProteinID:
XP_056269679
LinkDB
All DBs
Position
4:34313375..34407828
Genome browser
AA seq
2524 aa
AA seq
DB search
MQLRGHATPGPHDHTGPRNPQGHLTTRHTLPATQPLGHTTTGPTHYNWPQAMPSRTGHAN
HVPHHGATRPHGATQPRGQHRPRKPHATTGATITTTGPQTTGPTQPRRPRMTTGPHNHTG
PRNHGATQPHGATQPRGHHDPPRRAGPHDHTGPHNHGATQPQGHAITGPHDHTGPRNHGA
TRHAGPRNHRAIIGPRNHGPHDHHQGPRNHEATACRPTQPRGHATTGPRNHGATRNHTGR
EPRGHHDHTGHAEIMPGHTATGPRNHGATQPRGHTTTWGHATTGPHDHTGPRNHRATRGH
ATTGPHDHTGPHDHTGPRNHGATRPRGHDCDHATHAGATGLETHEVLLTLKKPKGQEEAP
FLVFHAAHLGTNAKVRRYDTCATTFIKKISVRCLEFKGQRSVPGGDPAVTRRMALSSLSL
VSSSVEPGAELLRVQYLKADRAGPGFSSVYNNTEQMINVTFTSLDLVLHTEALLSAISFV
SAALPPGRASSEERGSGPRAEEEESSPMSGVSPRLRPSGRSWQEVNSASCFPPAAPASPA
GSEVIELKVVMTLGAFGVLLCDRSCNMADIKIQGVHGALLVQGTHTQVSARLRDFIVLNA
DPHSVHRKAVSIVGDEVFSFNVSLTPNATEGAGYSDTSRTDGSVRLSVGCIQVVYLHKFI
MSLLNFTNHFQAAKEALGAATAQAAEKAASGVRGLAQKSFRLAVDVRLQAPIIIIPRSST
SHDALVMDLGLITVGNSFSLLPVDGCPLPAVVDNMDVELTQLKLSRGCTDPEARRPPTEL
LQPLNLHLNLKRNLAASWHKDMVPVEITGDLKPMKVELSQDDLTMLLRILMENLGEASSL
EASAPRAEAGLQGPAAGGPRAGAVGPVGCEEEEEEETLRFTFNIESLGLVLYSNDPQQPS
PPTRQQHLRLGGLAFHRLRASGSLQSGGGVALSAALSSCTLDDLRSGVQRVTSRMVGRRD
RASAEPMVDLSYRQSAGRREAAAVLQAPYLCASVEFLMAVADFFLKALPPRPAPSAPLRP
TAGPRPEAQTGPRVRTRLRLVVLDPEVVFVASLMQADAPSLVASFQCDFSLQAEEDGTQS
ARAHLRELKVLACPFIRSREDEAVTTVLRPCSVALEARTHPDRPLSGSVVVEEVIVKISP
FILNAVQSITAAMTAEQSGEQSREAEADLGDLWSAMNLYSCNYWFLGVDRAPEATESLGE
PGGRQEGQSFTAEVKVVQVTLESGLGHRTVPLLLAESSFSGSATNWSSLLQLRANMTLEV
NYFNELQAVWEPLIERVDSGRRRWTLELEMKNNPVQDQSSVHGDDFVFLPEPRTFISVSS
KDTLNITVSQSSLQVFHHLAQAFSGSRASSCAYSLKEKAPFSIRNCLGVPLFLQLSPSLR
PAGPPAGPPAQGTLLQLPEDGSLDLEFCSSPASHGKLSALQRQESGLFHLTMVPSGYSEV
ADVSLDWPGRRLYAARGAVRRESVSVLLQVDVVEGNKVVTVRSPLQIQNHFSVAFAVLRY
CAASGGLESVGQAEPERELHIDLESYRSQLFVRPAGSLEGRYGASTSCLAWKEQVHRSQE
VRSVLQCPAADAGLLPLAVVSLAVPDELRHIGSHGGRDWDPAYVIHLHPLAALRNLLPYT
VRYMMEVGVAIRLSSSSLTRVVTFSPFFTLVNRSSYELEVGEVTGPAATRWHYVSSSECL
PLWPDDIAGKLCVRVVGSESTSKFFFFNRQDNGTLLSLAQCGGLIVDVNMSDVSTAVGFS
DYYEGAAPALLLNHTPWVSIGYRQSGSAAARELKPGEARRFLWDDPAGVRKLSWSCEEHG
GELDLLKDGVGQFSSGSLAQVHWVSFLDGRQRVLLFTEDVAVVTKARQAEELEQFQQEVK
VSLQSLGLSLVNNANRQEIAYIGITSSGVVWEMKPRSRWKPLSQKSINQLEKTFQGQQAG
WVRLEGNLEVNLDAAVMAMRRPFCSPLRRNFLSGVQVEFKQSPHQRSLRAQVHWLQVDNQ
LPGAIFPIVFHPVPPPKSIALDSEPKPFIDVSVITRFNRHSSVMQFKYFMALVQEMAVKI
DQGFLGATLALFSPAADPQADKQKEQLLDGDLQLLQAELMEASLSDQSGLSFFEHFHISP
IKLHLSLSLGSSGDDSSQETAALQSFNLLLKSIGATLTDVDDLIFKLAFFEVKYQFYRRE
KLMWAVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPFQGAVQGPEEF
AEGFVIGVRSLLGHTVGGAAGMVSRITGSVGKGLAAITMDKEYQQKRREEMNRPPRDFGQ
SLAKGGKGLLKGVLGGVTGIVTKPVEGAKKEGALGFFKGIGKGLVGVVARPTGGIVDMAS
STFQGIQRAVESSQEVTQLRPVRLIQEDGVIRPYDLTESQGLDLFQRSGLQQLDGEVFRA
HLQYPGHRKTTIIVTNRRVLCVKEIDFVGHFSREWECLFENFSRPPTVTGSQLRLYCKEQ
QMLKLSQDSVRNLELRDPNSAQVGPPPRRKTSMGVRGRPPWGSEEEDLHEGQRTSMGVRG
GRPP
NT seq
7575 nt
NT seq
+upstream
nt +downstream
nt
atgcaactacggggccacgcaaccccggggccacacgaccacacagggccacgcaacccg
cagggccacctgaccacgagacacacattgccggccacgcaaccactgggccacaccacc
actgggcccacgcattataactggccgcaggccatgccttcccgcacgggccacgcgaac
cacgtgccacaccacggggccacacgaccacacggggccacgcaaccacggggccaacac
cgacctcgtaagccacatgcaaccaccggggccacgatcaccaccacgggcccgcaaacc
acgggacccacgcaaccacggaggccacgcatgaccacagggccacacaaccacacgggg
ccacgcaaccacggggccacacaaccacacggggccacgcaaccacggggccaccacgac
ccaccacgacgtgcggggccacacgaccacacggggccacacaaccacggggccacgcaa
ccacagggccacgcaatcacggggccacacgaccacacggggccacgcaaccacggggcc
acacgacatgcagggccacgcaaccacagggccattatcgggccacgcaaccacgggcca
cacgaccaccaccagggcccacgcaaccacgaggccacagcctgcagacccacgcaacca
cggggccacgcaaccacggggccacgcaaccacggggccacacgcaaccacacagggcgc
gaaccacgaggccaccacgaccacacgggccacgcagaaatcatgccgggccacacggcc
acggggccacgcaaccacggggccacgcaaccacggggccacacgaccacatggggccac
gcaaccacggggccacacgaccacacggggccacgcaaccacagggccacacggggccac
gcaaccacggggccacacgaccacacggggccacacgaccacacagggccacgcaaccac
ggggccacgcggccacggggccacgactgcgatcatgcgactcacgcaggggccacgggc
ctcgagacccatgaggtgctgctgaccctcaagaagcccaagggccaggaggaggccccg
ttcctggtcttccacgcggctcacctgggcaccaacgccaaggtcaggaggtacgacacg
tgcgccacgaccttcatcaagaagatctccgtgaggtgcctggagttcaaaggtcagcgc
tctgtgcccggcggtgacccggcggtgacccgacgcatggcactgagctcgctgagcctc
gtcagctcctcggtggagcccggcgccgagctgctcagagtgcagtacctcaaggcggac
cgcgccgggcccggcttcagctccgtctacaataacacggagcagatgatcaacgtgacg
ttcacctctctcgacctcgtgctccacactgaggctctgctgtcagccatcagcttcgtg
tcggcggcgctcccgcccggcagagcgtcgtctgaggagcgagggagcggcccccgggcg
gaggaggaggagtccagtcctatgagtggcgtctcacctaggctccgcccctcaggacgc
tcctggcaggaggtgaactctgcttcttgtttcccgccagccgccccggcgtcccctgca
ggaagtgaggtcatcgagctgaaggtggtgatgacgctgggagccttcggcgtcctgctg
tgcgaccgcagctgcaacatggccgacatcaagatccaaggtgtccacggcgctctgctg
gtgcagggaacgcacactcaggtgtccgcccgcctccgggacttcatcgtcctcaacgcg
gacccccacagcgtccaccgcaaggcggtctccatcgtgggcgacgaggtgttcagcttc
aacgtgagtctgactccgaacgccaccgagggcgccggctacagcgacacctccaggacg
gacggcagcgtccggctgagcgtgggctgcatccaggtggtctacctgcacaagttcatc
atgtctctgctgaactttacgaaccacttccaggcggcgaaggaggcgctgggcgccgcc
acggctcaggcggcggagaaggcggcgtccggcgtccgcggcctggcccagaagagcttc
cgcctggccgtggacgtgaggctgcaggcgccgatcatcatcatcccccggtcctccacc
tcccatgatgcacttgtgatggacctgggtctgatcacggtggggaacagcttctccctg
ctgccggtggacgggtgcccgctgccggccgtcgtcgacaacatggacgtcgagctgacg
caactcaaactctccaggggctgcaccgaccccgaggcccggagaccccccacagagctg
ctgcagccactcaacctgcacctcaacctcaagaggaacctggcagcctcctggcacaag
gacatggtccccgtggagatcactggagatctaaagcccatgaaggtggagctcagtcag
gacgacctgacgatgctgctgaggatcctgatggagaacctgggggaggccagcagtctg
gaggccagcgccccgagagcggaggccggtctgcagggccccgcggccggaggcccccga
gcaggagctgttggacctgtcggctgtgaagaggaggaggaggaggagaccctgaggttc
accttcaacatcgagtctcttggtctggttctgtacagcaacgacccccaacagccctcc
ccccccacgcggcagcagcacctccgtctgggcgggttggcgttccaccggctgcgggcc
tcggggtcgctgcagagcggcggcggcgtggcgctgagcgcggcgctgagcagctgcacg
ctggacgacctgcggagcggcgtgcagagggtgacctccaggatggtgggtcggcgggac
cgggccagcgccgagccgatggtggacctgagctaccggcagagcgccgggcgccgcgag
gcggcggcggtgctgcaggcgccgtacctgtgcgccagcgtggagttcctgatggccgtc
gccgacttcttcctgaaggcgttgcccccgaggccggccccctcggcgccgctgaggccg
accgccgggccgcgacccgaggcccagaccggccccagggtgaggacccgtctgcggctg
gtggtgctggacccggaggtggtgttcgtggccagcctgatgcaggccgacgccccctcc
ctcgtggcctcctttcagtgcgacttcagcctgcaggccgaggaggacgggacccagagc
gccagggcccacctccgggagctgaaggtcctggcctgccccttcatccggagccgggag
gacgaggccgtgaccacggtgctgaggccctgctccgtggccctggaggccagaacccac
ccggaccggcccctgagcggctccgttgtggtggaggaagtcattgtcaagatctcgccc
ttcatcctcaacgcggtgcagagcatcacggccgccatgacggcggagcagagcggcgag
cagagtcgggaggccgaggctgacctcggcgacctctggtccgccatgaacctctacagc
tgcaactactggttcctgggcgtggaccgggcccctgaggccaccgagagcctcggggag
ccgggcggccgccaagagggccagagcttcacggcggaggtcaaggtggtccaggtgact
ctggagtccggtctgggccatcggacggtccctctgctgctggccgagtcctccttcagc
ggatcggccacaaactggtcctctctgctgcagctccgagccaacatgaccctggaggtg
aactacttcaacgagctccaggccgtgtgggagcctctgatcgaacgggtggacagcggc
cggcggaggtggaccctggagctggagatgaagaacaacccggtccaggaccagagttcg
gtccacggggacgactttgtcttcctgccagaaccccggaccttcatcagcgtctcctcc
aaggacaccttgaacatcacggtgtcacagagcagcctgcaggtgttccaccacctggcc
caggccttctctggctccagggcctcgtcctgtgcctactccctgaaggagaaggccccc
ttcagcatcaggaactgcctgggcgtccctctgttcctgcagctgtcccccagcctgagg
ccggccgggcccccagccgggcccccagctcaggggacgctcctccagctgccggaggac
gggagcctggacctggagttctgctccagcccggcgtcacacggcaagctgtcagctcta
cagcggcaggagagcggcctgttccacctcaccatggtcccctctggctacagcgaggtg
gccgacgtgtctctggactggccgggccggcggctctacgcggcgcgcggcgcggtgcgg
cgggagtcggtctccgtgctgctgcaggtcgacgtcgtcgagggcaacaaggtggtcacc
gtgcgctcgccgctgcagatccagaaccacttctcggtggccttcgccgtgctgcggtac
tgcgccgcctccgggggcctggagagcgtcgggcaggcggagccggagcgggagctccac
atcgacctggagtcgtacaggagccagctgttcgtgcgtccggccggcagcctggagggc
cgctacggggcctccacctcctgcctggcgtggaaggagcaggtgcaccgcagccaggag
gtgcgctcggtgctgcagtgcccggcggccgacgccggcctgctgccgctggccgtcgtc
tcgctggccgtccccgacgagctgcggcacatcggcagccacggggggcgggactgggac
ccggcctacgtgatccacctccacccgctggccgcgctgcgcaacctgctgccctacacc
gtccgctacatgatggaggtgggcgtggccatccggctgagcagctccagcctcacgcgg
gtcgtcaccttcagtccgttcttcacgctggtcaacaggtcgtcctacgagctggaggtc
ggcgaggtcaccggcccggccgccaccaggtggcactacgtctcctcctccgagtgtctt
cctctgtggccggacgacatcgcggggaagttgtgcgtccgggtggtcggatctgaatcc
acctccaagttcttcttcttcaaccggcaggacaacggcaccctgctgagcctcgcccag
tgtgggggcctcatcgtagacgtcaacatgtccgatgtctccaccgccgtcggcttctct
gactactacgagggagcagctccggctctgctgctcaaccacacgccctgggtcagcatc
ggctaccggcagagcggctcggcggcggctcgcgagctgaagcccggcgaggctcggcgg
ttcttgtgggatgacccggccggcgtccggaagctcagctggagctgcgaggaacacggt
ggagaactggacctgctgaaggatggcgtgggccagttctcctccggcagcctggctcag
gtgcactgggtctccttcctggacgggcgccagcgggtgctgctgttcaccgaggacgtc
gccgtggtgacgaaggcccggcaggccgaggagctggagcagttccaacaggaagtcaag
gtgtcgctgcagagcctcgggctgtcgctcgtcaacaacgccaaccggcaggagatcgct
tacatcggcatcaccagctccggcgtggtgtgggagatgaagccgaggagccgctggaag
ccgctgagccagaagagcatcaaccagctggagaagacgttccaggggcagcaggccggc
tgggtccggctggagggcaacctggaggtcaacctggacgcggccgtcatggcgatgcgg
cgccccttctgctcgccgctcaggaggaacttcctgtccggggtccaggtggagttcaaa
cagtcgccgcaccagcgcagcctgagggcccaagtgcactggctgcaggtggacaaccag
ctgccaggcgccatcttccccatcgtcttccatccggttcctcctcccaaatccatcgct
ctggactccgagccgaagccgttcatcgacgtgtccgtcatcaccaggttcaaccggcac
agcagcgtcatgcagttcaagtacttcatggctctggttcaggagatggcggtgaagatc
gaccaggggttcctgggggccaccttggctctgttcagtccagctgcagacccccaggcc
gacaagcagaaggagcagctgctggatggagacctccagctgctgcaggcggagctgatg
gaggcctcactcagcgaccaatcaggactcagcttcttcgaacatttccacatctcgccc
atcaagctccatctcagtctgtctctgggctccagtggcgatgactcctctcaggagacg
gcggctcttcagtctttcaacctgttgctgaaaagtatcggtgccacgctgacggacgtc
gacgacctcatcttcaagctggccttcttcgaggtgaagtaccagttctaccgcagagag
aagctgatgtgggccgtggtgcgtcactacagcgagcagttcctcaagcagatgtatgtt
ctggttctgggtctggacgtcctcgggaaccctttcggactgatccgaggtctgtctgag
ggagtggaggccttcttctacgaaccgttccagggagccgttcagggtcccgaggagttc
gcagagggttttgtgatcggagtccgcagcctgctgggtcacacagtcgggggcgctgca
ggaatggtttccaggatcacgggttcggtgggaaagggtctggcagccatcaccatggac
aaagagtaccaacagaagcgccgggaggagatgaaccgcccccccagagacttcggccag
agtctggctaaaggagggaaaggactgctgaagggggtcttgggcggagtcacaggcatc
gtcaccaagccggtggagggagcgaagaaggagggagcgctgggcttcttcaagggcatc
gggaaaggcttggtgggcgtggtcgcccggccgacgggcggcatcgtggacatggctagc
agcaccttccagggcatccagagagcggtggagtcctcacaggaagtgacccagctgcgt
ccggtgcgtctgatccaggaggacggggtcatccgaccttatgacctcacggagtcgcag
ggcttggacctttttcagcgctcggggctccagcagctggacggggaggtcttcagggcc
cacctccagtatcctggacacaggaagaccaccatcatcgtcaccaacaggagggttctg
tgtgtcaaggagatcgacttcgtgggtcatttcagccgcgagtgggaatgtttgtttgag
aacttctccagacctccaactgtgacgggcagccagctgaggctctactgcaaggagcag
cagatgctgaagttgagtcaggactctgtgaggaacctcgagctccgagaccccaactct
gctcaggtgggtccaccaccgaggaggaagacctccatgggggtcagaggaagaccacca
tgggggtcagaggaggaagacctccatgagggtcagagaacctccatgggggtcagagga
ggaagacctccatga
DBGET
integrated database retrieval system
