Pseudoliparis swirei (Mariana hadal snailfish): 130193437
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Entry
130193437 CDS
T09868
Symbol
rnf13
Name
(RefSeq) E3 ubiquitin-protein ligase RNF13
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130193437 (rnf13)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130193437 (rnf13)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130193437 (rnf13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
PA
zf-RING_11
zf-C3HC4
zf-C3HC4_2
zf-RING_5
zf-RING_UBOX
zf-rbx1
zf-C3HC4_3
zf-ANAPC11
zf_RING_Vps8
zf-RING_16
Prok-RING_4
zf_RING_Vps8_fungal
DUF7027
FeoB_associated
zf-RING_4
PHDvar_NSD
RINGv
BSP_II
PHD
zf-RING-like
zf-C3H2C3
Hemotin
Motif
Other DBs
NCBI-GeneID:
130193437
NCBI-ProteinID:
XP_056269846
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All DBs
Position
5:complement(18554527..18592141)
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AA seq
380 aa
AA seq
DB search
MLLSLGMLMLSATQIYTIFTVQLFAFLNLLPVEADIAAYSFENKTDNFDDLPARFGYRLP
SDGLKGFLIGARPENACEPIEPPPRDNMTGAFIVLIKRFDCNFDIKVLNAQKAGYKAAIV
HNVVSDDLISMGSNDLDIMKQIDIPSVFVSEHTANSLKEDFTFDKGGHVVLKPDFSLPLE
YYLIPFLIIVGICLILIVVFMITKFVQDRHRARRSRLRKDQLKKLPIHKYKKGDDYDVCA
ICLDEYEEGDKLRVLPCSHAYHSKCVDPWLTKTKKTCPVCKQKVVPSHGDSDSDSEEGES
GPDENEEVSESTPLLRSLASTSAHSFGTMSGASRSEPDQESSDDEDDELDSSEDEVTVES
VVVQMQQPCSEGLEHDLPRA
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgtccctgggaatgctaatgctgtcggccacacagatttacaccatcttcact
gttcagctcttcgccttccttaatctgctgcccgtggaggccgacatcgctgcttactca
ttcgaaaataaaaccgataactttgatgacctgcctgcacggtttggctatcggctgcca
agcgatggactgaagggcttcctgattggtgcacgaccagaaaatgcgtgtgagcccatc
gagccccctccaagggacaacatgaccggcgccttcatcgtcctcatcaagcgctttgac
tgcaactttgacatcaaggtcctcaatgctcagaaagccggctacaaagcggccattgtt
cacaatgtggtctctgatgacttaatcagcatgggatccaatgatctggatattatgaag
cagatagatattccctcggtgtttgtgagcgagcacactgccaactctctgaaagaggac
ttcacatttgacaaagggggacacgtggtcctcaagccagacttcagtctgcccctagaa
tactacctgatccccttcctcatcattgttggaatctgcctcatcctcatcgtcgttttc
atgatcaccaagttcgtccaggatcgacatcgggctcggaggagccgcctgcgcaaagat
cagctcaagaaacttcccatccacaagtacaagaaaggagacgactatgatgtctgcgcc
atctgcctggacgaatatgaagaaggtgacaaactccgggtcctgccttgttctcatgcc
taccacagtaagtgtgtggacccctggctcaccaaaaccaagaagacgtgtccggtgtgc
aagcagaaagtggtgccctcgcacggcgactccgactccgactcggaggagggggagagc
ggccccgacgagaacgaggaggtgtcggagagcacccccctcctgcgctctctggcatcc
accagcgcccactccttcggcaccatgtcgggagcgtcgcgctcggagccggaccaggag
tcctccgacgacgaggacgacgagctggacagcagcgaggacgaggttaccgtggagtcc
gtggtggtgcagatgcagcagccgtgctcggaaggcctggagcacgacctcccccgagcc
tga
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