Pseudoliparis swirei (Mariana hadal snailfish): 130193536
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Entry
130193536 CDS
T09868
Symbol
ushbp1
Name
(RefSeq) nuclear mitotic apparatus protein 1 isoform X1
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pswi03037
]
130193536 (ushbp1)
Cilium and associated proteins [BR:
pswi03037
]
Primary cilia and associated proteins
USH complex and associated proteins
130193536 (ushbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
FAM176
Motif
Other DBs
NCBI-GeneID:
130193536
NCBI-ProteinID:
XP_056270024
LinkDB
All DBs
Position
5:complement(1922483..1933980)
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AA seq
698 aa
AA seq
DB search
MGTTGRRLHRDTSGSRRMEGSLLARCDGLDGGSECDGEERTPGSRLTFDPEGSAPKANRE
PSPAELAQCEAEVGTLLGIIAELNKKMGSLKAPSEPGDLRPRGSSRPPVPDLLSHRLARS
SPERSPAPSATPRPSLTDRGGGGVVWSKLQAVLSSVEDSISCKRSWAAPITAADQHTHRE
HVWAAQESWGRATQILEEMEIEFGISCPPELPRDQDQEDQDQKDQDQEDQEDQDQKDQED
LLDLRGPLQSHQEDLERAQRTFSQMEEEKNKLLGLHRSWRSGGRSPSYRAGPDWTPPPAA
SPSPSRRIPVGGGGSATSCSPCPSPIGPETESERLTRCIERLRARNERLTVALERRRGEE
EQILRLEATCSALQAALRNREECEEAHGELLSLYDAERQQSVPLQVHAAEAAGEELTTSF
STAGVTEETQSHAGQRTPEPAGRAALLRQLIERLKSDRAAGGVQGKTSPEPAGSRAGHVT
KENAKPPEPRNDKASLFYELVSVREEMSDLRSLIRLKEKELRCLEWGLMAQRAHEGLGEE
LEDREAEQQTLCEHEHGAERGAERGAERGAERGAERGDRGAERGVPDPWTRPVLKELQAV
LQREQALKKRLALVQDSLRTALSDGTAPRRDNGEQIARLTQAHSKALSSYRQIRRKYREQ
GWRLEQKVAAVMETRPLQGGAPKAAAEASDWKREETVL
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgggaacaacaggaaggagacttcatcgggacacatcgggatcaagaagaatggagggt
tccctcctggcccggtgtgacggcctggacggcgggtcagagtgtgacggggaggagagg
accccgggcagccgcttgacctttgaccccgagggctccgcccccaaagccaaccgggag
ccttcgcccgcggagctggctcagtgcgaggccgaggtggggacgctgctcggcatcatc
gccgagctgaacaagaagatggggtcattgaaggcaccgagtgaaccaggagacctgaga
ccacgaggatcatccagacctccggttccagacctgctctcccataggctggcccggagc
agcccagagagaagccccgccccttctgccacgcccagaccgtcactgacggaccgaggg
ggcggtggtgtcgtgtggtctaagctccaggcggtgctgtcctcggtggaggactccatc
agctgtaagcggtcctgggcggcccccatcacggcggcagaccagcacacgcaccgggag
cacgtgtgggccgctcaggagagctgggggagggccacgcagatattggaggagatggaa
atcgagtttgggatctcctgcccgccagaactgccgagggaccaggaccaggaggaccag
gaccagaaggaccaggaccaggaggaccaggaggaccaggaccagaaggaccaggaggac
ctcctggatctcagaggccccttgcagagccaccaggaggatctggagagagcacaacgc
accttcagccagatggaggaggagaagaacaagctgttgggcctccacaggtcctggagg
tcaggaggtcgctctccttcctaccgggccggtccggactggacccctcctccagctgct
tcaccttccccctccagacggatccctgtggggggcggtggttctgccacctcctgcagt
ccgtgtccgagtcccatcggcccggagaccgagtccgagcggctgacccgctgcatcgag
aggctgagggccaggaacgagcggctgacggtggctctggagcggcggagaggagaggag
gagcagatcctccggctggaggcgacctgctcggcgctgcaggcggcgctcaggaacagg
gaggagtgcgaggaggcgcacggcgagctgctgtcgctctacgacgccgagaggcagcag
agcgttcctctgcaggtgcacgcagcagaggcagccggtgaggagctgaccacctccttc
tccacagcaggagtcacagaggagacgcagagccacgcggggcagaggacgcccgagccg
gcggggcgggcggcgctcctccggcagctgatcgagcgcctgaagagcgaccgggccgcc
ggaggagtccaggggaagacgagccccgaaccggctggatccagagctggtcatgtgact
aaagagaacgccaaaccccccgagcccaggaacgacaaggcgtcgctcttctatgaactc
gtctctgtccgggaggagatgtcggatctgcgatctctcatccgcctgaaggagaaggag
ctgcgctgtctggagtggggtctgatggcccagagggcccacgaaggcctgggggaggag
ctggaggaccgggaggcggagcaacagacgctctgtgaacacgagcatggcgccgagcgg
ggcgccgagcggggcgccgagaggggcgccgagcggggcgctgagcggggcgaccggggc
gccgagcggggtgtccctgatccttggacccggccggttctgaaagagctgcaggccgtg
ctgcagagggaacaggccctgaagaagaggctggcgctggttcaggactcactccgcacg
gcgctgtcggacggcacggcgcccaggagggacaacggagagcagatagcccgacttaca
caagctcacagtaaagccttgagttcgtaccggcagattcgccgaaagtaccgcgagcag
gggtggaggctggagcagaaggtggcggccgtgatggagacccgccccctgcagggcgga
gccccgaaggctgcagccgaggcctcggactggaagagggaggagacggttctgtga
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