Pseudoliparis swirei (Mariana hadal snailfish): 130193608
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Entry
130193608 CDS
T09868
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013
Nucleocytoplasmic transport
pswi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130193608
03015 mRNA surveillance pathway
130193608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130193608
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130193608
5.6.2.5 RNA 5'-3' helicase
130193608
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130193608
mRNA cycle factors
Common to processing body (P body) and stress granule
130193608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
130193608
NCBI-ProteinID:
XP_056270147
LinkDB
All DBs
Position
5:complement(2679432..2694861)
Genome browser
AA seq
1111 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLLNGGVEDSVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDSILYTPVFKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKT
FAVDETSVSGYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSL
IQGPPGTGKTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSR
EAIESPVSFLALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMN
ADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPV
VMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAD
RIKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQ
IGIITPYEGQRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQG
IGFLNDPRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRES
LMQFSKPRKLVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGM
IGAGLSHMSAMNIPIPFNLVMPPMPPPSYLGQTNVPAAGRGAMKGKPGRGGRQRVRGSAH
QGASQGNGPNSQASQDGASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEF
KSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcccagaccctcaccttcctggacaccgaggaa
acggagctgctcggcgcggacacccagggctccgagtacgacttcaccgacttcaccctc
cccagccagacgcagacccaaggccagacccagagccagctggacagccaggtgaacggt
cctgatgagggtcttctcaacgggggggtcgaggactccgtggccaaagccagccagctg
ctggccgagctcaacttcgaggaggacgaagaagacacgtactacaccaaagacctgccg
ctgcacgcgtgcagctactgcggtattcacgatccggcatgtgtggtgtactgcaacacc
agcaagaagtggttctgtaacggacgtggcaacacatctggcagccacattgtgaaccac
ctggtgagggcgaaatgcaaagaggtgacgctgcacaaagacgggccgctgggcgagacg
gtgctggagtgttacaactgcggctgccgcaacgtcttcctcctgggcttcatcccggcc
aaggccgattctgtggtggttctgctctgcaggcagccctgcgccagccagagcagcctg
aaggacatcaactgggacagctctcagtggcagccgctgatccaggaccgctgctttctg
tcctggctggtgaagatcccgtctgagcaggagcagctgcgggcccgtcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggacaaccccaccgccaccctggaagac
ctggagaaacctggagtggacgaggagccgcagcacgtgctgctgcgctacgaggacgcc
taccagtaccagaacatcttcggcccgctggtcaaactggaggccgactacgacaagaag
ctcaaggagtcccagactcaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcactctgcccaagacggactcaggtgatatgcggctgatgcaa
ggggatgagatctgcttgcgctacaagggagacctcgccccgctgtggaaaggcatcgga
cacgtcatcaaagtccccgacagtatcctttacactcctgtctttaaagactatggggac
gaaattgccatcgagctgcgcagcagcgtcggagcgcccgtggaaatcccccacaacttc
caggttgactttgtgtggaagtccacgtccttcgacaggatgcagagcgccctgaagacc
ttcgcggtggacgagacctccgtgtccggctacatttaccacaagctgctgggccacgag
gtcgaggacgtcaccatcaagtgccagctgcccaagcgcttcaccgcccagggcctgccc
gacctcaaccactcacaggtgtacgcggtgaagacggtgctccagaggcccctgagcctg
atccaaggcccccccggcaccgggaagaccgtcacctcggccaccatcgtctaccacctg
tcccgtcaaggcaacgggccggtgctggtgtgcgctcccagtaacatcgccgtggaccag
ctgacggagaagatcgacaagaccggactgaaggtcgtccggctgtgcgcgaagagccgg
gaggccatcgagtcgccggtttccttcctggcgctgcacaaccagatcagcaacatggac
agcatgccggagcttcagaaactgcagcagctgaaggacgagaccggcgagctgtcgtcc
gccgacgagaagcgctaccgggctctgaagcgcacggcggagagggagctgctcatgaat
gccgacgtcatctgctgcacctgcgtcggcgccggagatcctcgtctggccaagatgcag
ttccgctccatcctgatcgacgagagcacccaggccacggagcccgagtgcatggtgccc
gtggtgctcggggccaagcagctcattctggtgggtgaccactgccagctgggccccgtg
gtgatgtgtaagaaggcggccaaggccggtctgtcccagtccctgtttgagcgcctggtg
gttctggggatccggccgatccgcctgcaggtccagtaccgcatgcacccggctctcagc
gccttcccctccaacatcttctacgagggctccctgcagaacggcgtcactgcagctgac
cgcatcaagaagggctttgacttccagtggccgcagccagacaagcccatgttcttctac
gtgacccagggtcaagaggagatcgccagctctggaacctcctacctcaacaggacggag
gccgcgaacgtggagaagatcaccaccaggctgctgaaggccggagccaagccggaccag
atcggcatcatcacgccgtacgagggccagcgctcctacctggtccagtacatgcagttc
agcggctccctgcacaccaaactctaccagcaagtggagattgccagcgtggacgccttc
cagggccgagagaaggacttcatcatcctgtcctgcgtccgcgccaacgagcaccagggc
atcggcttcctgaacgacccgcgccgcctcaacgtggcgctgaccagagccaagtacggc
gtgatcatcgtggggaaccccaaggcgctgtccaagcagccgctgtggaacaacctgctg
aacaactacaaggagcagaaggtgctggtggaggggcccctgaacaacctgcgggagagc
ctgatgcagttcagcaagccgcgcaagctggtcaacaccatcaaccccggcggccgcttc
atgagcaccgcgatgtacgacgcccgcgaggcgctcatccccggctccgcttacgaccgc
agcaacgccgccggacgcccgtccaacatgtacttccagactcacgaccagatcgggatg
atcggcgccggcctcagtcacatgtccgccatgaacatccccattcccttcaacctggtg
atgcccccaatgcctccgcccagctacctgggtcagaccaacgtccctgctgcaggtcgt
ggagccatgaagggtaagccgggccgcggcgggcggcagcgggtccgcggatcggcccac
cagggcgccagtcaagggaacggaccgaacagccaggccagccaggacggggcctcccag
ccgttctcccaggggccgctgacccagggctacatctccatgagccagccctcccagatg
agccagcctggcctctcccagccggagctgtcccaggacagttacctgggcgacgagttc
aagtcccagatcgacgtggctctgtcccaggactcgacttaccagggcgaacgagcgtac
cagcatggcggggtgactggactgtcacagtactaa
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