Pseudoliparis swirei (Mariana hadal snailfish): 130193653
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Entry
130193653 CDS
T09868
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130193653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130193653
03036 Chromosome and associated proteins [BR:
pswi03036
]
130193653
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130193653
Coactivators
SAGA/TFTC/STAGA complex
130193653
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
130193653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
DUF3106
Motif
Other DBs
NCBI-GeneID:
130193653
NCBI-ProteinID:
XP_056270250
LinkDB
All DBs
Position
5:complement(14306305..14330389)
Genome browser
AA seq
705 aa
AA seq
DB search
MAMNKVVLEAQKLESCGAVANGDNAIQVKILQVPAKCGPTAALPPPPTAAAVSKAVSVSA
PPKVIPIGHLHQPTSSAVAVTGRQTSSFMVVTKVSTPGGVGASGQPQGTKPVLSQVTSKN
QATTPGRTVVITVPRAAGTQTVTVPSRLPQTASTQLPANIQIPPGMMLIRSDSGQLMLVS
QQALAQAQQAPRGVNGQAPKLLVPQLSAVNKTNEKVTVIRMTAPPSFHPAPIQKTAVVKV
IGVTPKPAVVQTVSAVSDRGSQPGIQVVATETKKETPTTIDQATLDSVKKCKNFLVTLIK
LASSDSRSANMANNVKGLVRSLLEGKLEAEEFTEQLYHELKSTPQPCLVPFLKKSLPAVR
RLTADPQLFIQQASTSTSNLVKQSSTATGPLLSTSQQVTHPPSAVTLRPGVATLVQSRNY
ILKTSKPIPKHTVVQSGKPFAGMFSLKQPFTRDPPRSTTFTFKDSFGSYREDDDINDVTA
MAGVNLREENAQILTTVVGSVVHSCQDQPFLSPKPVLSQILRTGQALGVTDVGPEVVNLV
SHATQECLRGLLEKLTVVAEHRKAALKEDLWHAKVSDVRSQLRFLEEVESLKKKRIDEEE
RERLLRLARSRSHTEDPQHQQLKQRAKELQQMEDAQLQQREANLTALAAIGPRKKRPMEQ
TGSQVTLLPRPSIQRVTRVMLRDLLLCMEQDRFLCHSLPLYRAML
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggccatgaataaagtcgttcttgaagctcaaaagctggagtcctgtggggcagtagcg
aatggagacaacgctattcaagtcaagatattacaggtcccggccaaatgtggacccacc
gctgctctgccacctccacccactgctgcagccgtctcaaaggctgtgtctgtctctgcc
ccacctaaagtcatcccaattggccatctccaccaacccacctcctctgcagttgcagtc
acagggcgtcagacttcctctttcatggtggtaacaaaggtgtccaccccaggaggcgtg
ggcgctagcgggcaaccacagggcacaaaaccagtcttgagccaggtgacctccaaaaac
caggccacaaccccaggaaggacagtggtgataaccgtaccaagggcagcgggtacacag
acggtcactgtgccctcccggctgccacagactgcctccacacagctcccagccaatatc
cagataccaccaggtatgatgttgatccgcagtgacagtggtcagctgatgctcgtatcc
cagcaggctttagcacaagctcagcaggcaccaagaggtgtcaatggtcaagcacctaaa
ctactggtcccacagttatctgcagtaaataaaacaaatgagaaggtgaccgtgatcagg
atgaccgcccctcccagtttccacccagcaccaatccagaagaccgctgtggtaaaggtg
attggtgtgactcccaaaccagctgtagtccagaccgtcagcgctgtgtctgaccgggga
agccagcctggcattcaggtagtcgccacggaaaccaaaaaggaaacaccaaccaccatt
gatcaggcgaccctggatagtgtgaagaagtgcaagaacttcctggtgactctcatcaag
ctggcctccagtgactccaggtctgccaacatggctaacaatgtaaaaggactggtcagg
agtctgctggaagggaagctcgaagcggaggagtttacggaacagctttatcatgagttg
aagtccactccacagccctgcttggtgcctttcctcaagaaaagtcttcctgcagtgcgt
cgtctcaccgcggacccccagttattcatccaacaggcttcaacttctacgagcaacctt
gtgaagcagtccagcaccgccacaggacctctcctcagtaccagccagcaggtgacccat
ccgccttcagcagtgactctgagaccgggtgtggcgacattagtccagtccagaaattac
atattgaagaccagcaaacccatccccaaacacacagtggtccagtcgggaaaacccttt
gcaggaatgttttcattgaagcagcctttcactcgggatccgcctcgctctaccacgttt
acattcaaggacagcttcggatcatacagagaggatgatgacattaacgatgtcaccgcc
atggcgggggtcaacctgagagaggaaaatgcacagatcttgaccacggtggtcggctct
gtggtgcattcgtgccaggatcagcccttcctctcgccaaagccagtgctcagccaaatc
ctccgtacaggacaggcattgggagtgacggatgtcggcccagaggtggtgaatctggtg
tctcatgccactcaggagtgtctccgtgggctgctggagaagctcactgttgtggcagaa
caccgcaaggcagcactgaaggaggacctgtggcatgccaaagtgagtgatgtgcgatcc
cagcttcgcttcctggaggaagtggagagtttgaagaagaagaggattgatgaagaggag
agggagagactgctgcgtttggccagaagtcgctcacacactgaggatccacagcatcag
cagctcaagcaaagagccaaagagctccaacagatggaagacgctcagctgcagcaacga
gaggccaacctcacggccctggccgccatcgggcctcgcaagaagagaccaatggagcag
acgggaagccaggtgaccctgctgcccagaccgagcattcagagggtgacccgcgtcatg
ctgagggatctgctgctgtgtatggagcaggaccgcttcctgtgccactccctccctctg
tacagagccatgctctga
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