Pseudoliparis swirei (Mariana hadal snailfish): 130193676
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Entry
130193676 CDS
T09868
Symbol
rorca
Name
(RefSeq) RAR-related orphan receptor C a isoform X1
KO
K08533
RAR-related orphan receptor beta
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130193676 (rorca)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pswi03310
]
130193676 (rorca)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
130193676 (rorca)
Nuclear receptors [BR:
pswi03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
130193676 (rorca)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Bystin
Motif
Other DBs
NCBI-GeneID:
130193676
NCBI-ProteinID:
XP_056270293
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Position
5:complement(22316755..22328901)
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AA seq
514 aa
AA seq
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MREPVYRVCLLTFEVHVACWRLAARRSKVRRLRARAGRQHRSHQTAQIEVIPCKICGDKS
SGIHYGVITCEGCKGFFRRSQQNNALYSCSRQRNCLIDRTNRNRCQHCRLQKCLALGMSR
DAVKFGRMSKKQRDSLYAEVQKHQQAQECAELGVREREEVDLADHTRSSTATLGDLDDIG
MLPEGLLFDLPLTPEDAGGDDCNLDMLGGSAGSTSSSQSSPEQTNLDFVDGNHSIKHEYQ
LLHDSGLFSHAILDPLPEGCSLLEIERITQSVLKSHIETSQYSTEELKRMAWTLYSQEET
RSYQTKSAEAMWQQCAIQITNAIQYVVEFAKRISGFMDLCQNDQIILLKAGCMDVLLIRM
CRAYNPINNTMLFDGKFTTAHLFKALGCDDLVNAVFDLTKSLSRVQMSEEEMALFSAAVL
LSPDRLWLTDVQKIQKLQEKVYVALQRCLQKEGASEEKQAKMVSKLPIMKSICNLHIDKL
EFFRLAHPETAYTFPPLYREVFGSEITFPDSTEG
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgagagagccggtataccgtgtttgtctattaacttttgaggtgcatgtagcgtgttgg
aggctggctgcgaggcggtccaaagtgcgtaggctgcgggctcgcgctggtcggcagcac
cgatcacatcaaacagctcaaatagaggtgattccgtgtaaaatctgtggggacaaatct
tcagggattcactatggtgtcatcacctgtgaaggctgcaagggtttcttccgacgcagc
cagcagaacaatgctctgtattcctgctcgcgacagaggaactgtttaattgaccggacc
aaccgtaaccgttgccagcactgcaggctgcagaagtgtctcgctctgggcatgagccgc
gatgcggtcaagtttggtcgaatgtccaaaaagcagcgcgacagcctgtacgcagaggtc
cagaagcaccagcaggcccaggagtgcgcggagctcggtgtccgcgagcgcgaggaagtc
gacctggccgaccacacgagaagctccaccgccacgctcggcgacctggacgacatcggc
atgctgccggaaggcctgcttttcgacctgccgctcacccccgaggacgcaggcggagac
gactgtaacctggacatgctgggcggcagcgcgggcagcacctcctcctctcagagctca
ccagaacagaccaacttggactttgtagacggcaaccacagcatcaagcacgagtaccag
ctgttgcacgactctggactcttctcacatgctatcctcgacccgctgcccgagggctgc
tccctgcttgagatagagcgtataactcagagtgtgctgaagtcccatattgagacgagc
cagtacagcacagaggagctgaagagaatggcgtggaccttgtatagccaagaagagaca
cgctcataccagaccaagtcagctgaggcgatgtggcaacaatgtgccattcaaatcacc
aacgcgatccagtacgtggtcgagtttgccaagcgcatctctggcttcatggacctctgt
cagaacgatcagatcatcctcctcaaagcgggctgcatggatgttcttctgatccgtatg
tgtcgggcctataaccccatcaacaatacgatgctctttgacggaaagtttacaactgct
catcttttcaaagcgcttggctgtgacgacttggtgaatgcagtgttcgacttgaccaaa
agcctgagccgggtacagatgtccgaggaagagatggctctcttcagtgctgctgtgctg
ctctcaccagaccgactctggctgacagatgttcagaagatacagaagttgcaggagaag
gtctatgtggctctgcagcgctgcctacagaaagagggagcatcagaagagaagcaagct
aagatggtgtctaagcttcccatcatgaagtccatttgcaaccttcacatcgacaaactg
gagtttttccgtctggctcaccctgagaccgcgtacaccttcccgcctctgtatcgggag
gtttttggcagtgaaatcacgttcccagactccacagaaggctag
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