Pseudoliparis swirei (Mariana hadal snailfish): 130193844
Help
Entry
130193844 CDS
T09868
Symbol
usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pswi01002
]
130193844 (usp13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130193844 (usp13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130193844 (usp13)
Enzymes [BR:
pswi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
130193844 (usp13)
Peptidases and inhibitors [BR:
pswi01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
130193844 (usp13)
Ubiquitin system [BR:
pswi04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
130193844 (usp13)
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
130193844 (usp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP_var
UBA_7
UBA
zf-UBP
UCH_1
RVT_1
Motif
Other DBs
NCBI-GeneID:
130193844
NCBI-ProteinID:
XP_056270596
LinkDB
All DBs
Position
5:20265079..20298731
Genome browser
AA seq
1006 aa
AA seq
DB search
MAVDLGELLVPYMPTVRVPRTGDRVFKSECAFSFDSPESEGGLYVCMNTFLGFGREHVER
HYRKTGQSVYMHLKRHVKAKATGAAGGAIPRRRNGKVFLDLELNRDFNGQDYEYEDEAKL
VIFPDHFEIPLPNIEELPALVTIACDAALNAPSAYKKQEPESWEEEIQVSRHARSLRQLD
NGVRIPPSGWKCQKCVMRENLWLNLTDGAVLCGKWFFDGSGGNGHALDHYKETKYPLAVK
IETITPDGADVYSFEEEEAVLDPHISEHLSHFGIDKLQMQKKTENGHHTENNSRPRVSEW
EVIQESGMKLKAVFGSGYTGIKNLGNSCYLGTVMQVLFSIPDFQRMYVGNLQRIFDYSPL
DPSQDFATQMAKLGHGLLSGQHSKPPMKSELIEQVMKEESKVLNWHQQKGVPPRMLKALV
GRGHPEFSSNRQQDAHEFLLHIINMVERNSAGLENPSDIFRFLVEERVQCCQTRQVRYSQ
RVDYCIQLPAPIEAATNREELMAYETKRRDAEENMQAPPEPVRARIPFTACLQAFTEPEN
VPDFWSSALQAKSAAVKTSRFASFPEYLVLQIKKFTFGVDWVPKKLDLAIDVPDFLDLSR
LRAIGLQASEEELPDLLPPIMLAEDTRDNSMSSIDSPEIDEAAVMQLAEMGFPLEACRKA
VYYTGNMGTEMAFNWIIAHMEEPALRRQDFAEPLTLPSIMDPGPSTSDSPVSATLLSNLP
PEESIAILTSMGFPRAHSIQALKATVAARISACLTDISQWMSAHHLKINPDKTELLFLPG
KGSPTHDLTTTFNSSVLAPTPTARNLGVTLDSQLSLTANITATERSCRYMLHNIRRIRPL
LTQKAAQVLIQALVISRLDYCNSLLAGLPAKAIRPLQLIQNAAARLVFSLPKFTHTTPLL
RSLHWLPVAARIRFKTLVLAYHALNGSGPVSIRDMVTPYTPARSLRSATANRLVTPAPRA
NHSKSRLFAVLAPQWWKGLPTDIRTAESLYIFRRRLKTHLFRLYLD
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggctgtagacctcggagagctgctggtcccgtacatgcccaccgtcagggtgcccagg
acaggagatagggttttcaagagcgagtgcgccttttccttcgactcccccgagtcggag
ggaggcctttatgtgtgtatgaacacattcctgggcttcggacgagaacatgtggagaga
cactatcgcaaaacagggcagagcgtttacatgcacctcaaacgacatgtcaaagcgaaa
gccacaggagctgcaggaggcgccatccccagacgaagaaatggaaaggtgtttctagat
ttagagctaaaccgggattttaacggacaggactatgaatatgaagacgaggccaagctg
gtcatttttccagaccacttcgagatccccttaccaaatattgaggagttgcccgctctg
gttaccatcgcttgtgatgcagcgctcaatgcaccgtcggcttacaagaagcaggagcct
gaatcctgggaggaggagatccaggtgtccagacatgccaggagtctcagacagctggat
aatggggtcaggatcccacccagtggttggaagtgtcagaagtgcgtgatgagagaaaac
ctgtggttgaacctgacagatggagcagtgctctgtgggaagtggttctttgatgggagc
ggaggcaacggccacgctctggatcactacaaagagaccaaataccccctggctgtcaaa
atagaaaccatcaccccagacggagcagatgtctactcatttgaggaggaggaagctgtg
ctggaccctcacatatcagaacacttgtcacactttggaattgataagctacagatgcag
aaaaaaacagagaatggtcaccacacagaaaataactccaggccgcgggtcagtgaatgg
gaggtgatccaggagtctggcatgaagctgaaagcggtgtttggttctggttacacaggc
atcaaaaacctgggcaacagctgctacctcggcacagtgatgcaggtcctgttcagcatc
ccagacttccagaggatgtatgttggtaatcttcagaggatatttgactattcacccctt
gaccccagccaggacttcgccacacaaatggctaaactgggacatggactgctctcaggc
cagcactccaaaccacccatgaaatctgagctcattgaacaggtgatgaaagaagaaagc
aaggtattaaactggcaccagcagaaaggagtcccccctcgaatgttgaaggctctggtc
ggcaggggacacccagagttttcctctaacaggcagcaagacgcccacgagttcctcctg
cacatcatcaacatggtggagaggaacagcgcaggtttagagaatccaagcgacatcttc
cgcttcctggtggaggagcgagttcagtgctgccagacacgtcaggttcgttacagtcaa
cgggtggactactgcatccagctgccagctcccattgaggcggccaccaatcgagaggag
ctgatggcatatgagaccaagcggagggatgctgaggagaatatgcaggctcccccagag
ccggtgagagcccggatccccttcaccgcctgcctgcaggccttcacagagccggaaaac
gttccagacttctggagctcagcgctgcaggccaagtcagctgcagtgaaaacttcccgt
ttcgcctccttcccagagtatctggttttgcagatcaagaaattcacattcggggttgac
tgggtgccgaagaaactagatttggccattgatgttccagactttctggatctgagcagg
ctgcgggctattgggctgcaggcgagtgaagaggagctgcctgacctccttcctcccatc
atgctagctgaagacaccagagataattccatgagctccatagactctccagaaatagac
gaggcggcagtaatgcagctggcagagatgggcttcccgctggaggcctgtaggaaggcg
gtctattacacaggcaacatgggcaccgagatggccttcaactggatcatagctcacatg
gaggagcctgcactgcgcaggcaagactttgcagaacctcttactctgccatccataatg
gaccctggtccttccaccagcgacagccctgtgagcgccaccctgctgagcaacttgccc
cccgaggagagcatcgccatcctcacttcaatgggcttcccccgtgctcacagcatccag
gccctcaaagccacggtggcggcgcgaatctctgcctgtctgactgacatctctcagtgg
atgtctgctcaccacctgaagatcaaccctgacaagaccgagctactattccttccaggg
aaaggctcccccacccatgacctgacgaccaccttcaacagctctgtgttggcccctacc
ccgactgccagaaacctcggggtgacactcgacagtcaactctccctgacggccaacatc
actgcgacagagcgttcctgtaggtacatgctgcacaacatcaggagaatacggcctctt
cttactcagaaggcggcgcaggttctgatccaggctctggtcatttcacgcctcgactac
tgcaactccctcctggctggtctacctgctaaggccatccgacctctgcagctcatccag
aatgcagcagctcgactggtcttcagtctcccgaaattcacccacaccactccgctcctc
cgctctctccactggttaccggtggctgctcgcatccgcttcaaaacactggttctggcg
taccatgcactaaacggatcgggccccgtctccatccgggatatggtcacaccgtacacc
ccggcacgttcgctccgctcggcaacagccaatcgacttgtgactcctgcacctcgagct
aatcactcgaaatccagactgtttgctgtcctggctcctcagtggtggaaggggctcccc
actgacatcaggacagcagaaagtctctacatcttccgtcggagactgaaaacacacctt
ttccgactatatctggattaa
DBGET
integrated database retrieval system
