KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130193866
Entry
130193866         CDS       T09868                                 
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018  RNA degradation
pswi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130193866 (lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130193866 (lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pswi03019]
    130193866 (lsm4)
   03041 Spliceosome [BR:pswi03041]
    130193866 (lsm4)
Messenger RNA biogenesis [BR:pswi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     130193866 (lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     130193866 (lsm4)
Spliceosome [BR:pswi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    130193866 (lsm4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 130193866
NCBI-ProteinID: XP_056270639
LinkDB
Position
5:2707358..2711821
AA seq 232 aa
MVTPDIIYGIFSKVGENNCIQLYSYLAFFYLVLVHYINQCFKCTGLKCESSLRSVRPIIE
VSRFLVPTIRPASCRRGSKAAGVFFACPFSPQLVELKNGETYNGHLVSCDNWMNINLREV
ICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGPQQNKQQGKGR
GGQGGQGGGAGRGLFGGRGRGMSGPSRGQQQQLQLQPPDKKTGKPQGAKNQH
NT seq 699 nt   +upstreamnt  +downstreamnt
atggtaacacctgatattatttatggtatatttagcaaagtgggtgaaaacaactgcata
caactttacagttatttagcttttttttatcttgtattggtccactatataaatcagtgt
ttcaaatgtaccgggctgaagtgcgagtcgtcgttgcgctccgtgcgtcccataattgaa
gtgtctcgttttctggttcctaccatccgtcctgcgtcgtgtcgtcgaggctctaaagca
gccggcgtcttctttgcgtgtcctttctctcctcagctggtggagctgaagaacggagag
acgtacaacggccacctggtgagctgtgacaactggatgaacatcaacctgagagaagtc
atctgcacctcgcgggatggagacaagttctggaggatgcccgagtgctacatcagaggc
agcaccatcaagtacctgcgaatccccgatgaaatcattgacatggtgaaggaggaggtg
gtgtcaaaggggcgtgggcgcggaggcccccagcagaacaagcagcagggcaaaggaaga
ggaggacagggaggccaagggggaggcgcaggccgaggtctgttcggcggccgcggccga
gggatgtcgggtcccagccggggtcagcagcagcagctgcagctgcagccgcccgacaag
aagacgggcaaaccgcagggcgccaagaaccagcactga

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