Pseudoliparis swirei (Mariana hadal snailfish): 130193891
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Entry
130193891 CDS
T09868
Symbol
sox2
Name
(RefSeq) transcription factor Sox-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130193891 (sox2)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
130193891 (sox2)
BRITE hierarchy
SSDB
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
130193891
NCBI-ProteinID:
XP_056270676
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All DBs
Position
5:11790270..11793410
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AA seq
322 aa
AA seq
DB search
MYNMMETELKPPAPQTNTGGSGNTNTSGTGTNQKNSPERVKRPMNAFMVWSRGQRRKMAQ
ENPKMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMK
KDKYTLPGGLLSAGGNGMGAGVGVGVGGGLGGGVNQRMDSYAAHMNGWTNGGYGMMQDQL
SYQHPGLNAHNQSQMQSMHRYDMSALQYNTMASSQSYMNGSPTYSMSYSQQGTPGMTTLG
SMGPSSVVKSESSSSSPPVVTSSSHRAGPGCQSGDLRDMISMYLPGAEVSEQTAQTRLHM
SGHYQSTVPGTTINGTLPLTHM
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggagactgaactgaagcccccggctccccagaccaacacggggggc
tcgggcaacaccaacacgtccggcaccggcaccaaccagaaaaacagtccggagcgggtc
aagagacccatgaacgcgttcatggtgtggtcccggggccagaggaggaagatggcgcaa
gaaaatcccaaaatgcacaactcggagataagcaagaggctgggcgcggagtggaaactt
ctgtcggagagcgagaagagaccgttcatcgacgaagccaagaggctgcgggccctgcac
atgaaggagcatccggattacaaataccggcccaggaggaaaaccaagaccctcatgaag
aaggacaagtacaccttgcccggtgggctgctgtcggcgggaggaaacgggatgggagct
ggcgtcggtgtcggggtggggggcgggctgggcggcggggtgaaccagcggatggacagc
tacgcggcgcacatgaacggctggaccaacgggggttacggcatgatgcaggaccagctg
agctaccagcacccggggctgaacgcgcacaaccagagccagatgcagtccatgcaccgc
tacgacatgagcgccctgcagtacaacaccatggccagctcccagagctacatgaacggc
tccccgacatactccatgtcctattcccagcaaggcacgccggggatgaccaccctgggc
tccatggggccctcatcggtggtgaagtccgagtccagcagctccagcccgcccgtcgtc
acctcgtcttcccaccgggccggcccgggctgccaaagcggagatctgagggacatgatc
agcatgtacctgcccggggcggaggtcagcgagcagaccgcccagaccaggctacacatg
tccggccactaccagagcaccgtgcccgggacgacgatcaacggcacgctgccgttaaca
cacatgtaa
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