Pseudoliparis swirei (Mariana hadal snailfish): 130194148
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Entry
130194148 CDS
T09868
Name
(RefSeq) pre-mRNA-splicing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130194148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130194148
Spliceosome [BR:
pswi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130194148
Complex C
U4/U6.U5 tri-SnRNP related factors
130194148
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
130194148
NCBI-ProteinID:
XP_056271014
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All DBs
Position
5:complement(7793593..7796152)
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AA seq
203 aa
AA seq
DB search
MANRTVKDANSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKYVGGV
FGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTAVDCYKYL
EPLYNDYRRVKSQNRNGEFELMHVDEFIDNLLHEERMCDIILPRLQKRHVLEEAEMLEPR
ISALEEDLDEMESSEEEDEEEDK
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacagaaccgttaaagatgcgaatagcatccacggtaccaacccgcagtatctg
gtggagaaaatcatccggactcgaatctacgagtctaaatactggaaggaggaatgtttc
ggtctcacggctgagctggtggtggacaaagccatggagctgaagtatgtcggtggagtg
tttgggggaaacataaagcccactcctttcctctgcctcacgctgaagatgctgcagatt
caaccggaaaaagacatcattgtggagttcatcaaaaatgaggatttcaaatatgttcgt
ttacttggagcgatgtacatgaggttaactggcactgcagtggattgctacaaatacctg
gagccgctgtacaacgattacagaagagtcaagagtcagaaccgaaatggagagtttgag
ctgatgcacgtggacgagttcattgacaaccttcttcatgaagagaggatgtgtgacatc
attctgcctcgacttcagaaaagacacgtcctcgaggaggctgagatgttagagccacgt
attagcgctctggaggaagatctggatgagatggagagcagtgaagaagaagatgaggaa
gaagataagtaa
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