Pseudoliparis swirei (Mariana hadal snailfish): 130194166
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Entry
130194166 CDS
T09868
Symbol
hcn2b
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
KO
K04955
hyperpolarization activated cyclic nucleotide-gated potassium channel 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130194166 (hcn2b)
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
130194166 (hcn2b)
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GFIT
Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
130194166
NCBI-ProteinID:
XP_056271032
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Position
5:complement(23829537..23860552)
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AA seq
1043 aa
AA seq
DB search
MDEEEEEDGEEEPKSQQPRPPRVPTSWAGREHHGSSAGTEMKRSTPGGGAASIARKKSDS
HELWLLPDQDCAPVGGAASALLCRGNAAAGRDAVVPQAVAPGATGMICNKNGDCIRDPTS
SGSLSSLLSRQEKQAAEDGKLQAASMDGSITSAGPLHAHGPGAEVRMIEKKDSRVSFSNA
PTSKGQTPSQHSRNSVTFTKAEDGSLIVPDDGDSRGNPTSMQRQFSSLLQPGVNKFSLRM
FGSQKAVEKEQERVKSAGKWIIHPYSDFRFYWDFTMLMFMVGNLIIIPVGITFFKEETST
PWIIFNVVSDTFFLMDLVLNFRTGIVFEDNTEIILDPKKIQKKYLQSWFVVDFVSSIPVD
YIFLIVERGLDSEMYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLAS
AVMRIFNLIGMMLLLCHWDGCLQFLVPMLQDFPSDCWVSLNKMVNDSWTELYSFALFKAM
SHMLCIGYGRQAPESMSDIWLTMLSMIVGATCYAMFIGHATALIQSLDSSRRQYQEKYKQ
VEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEESILEELNEPLREEIVNFNCRKLVATM
PLFANADPNFVTAMLTKLRFEVFQPADYIIREGTIGKKMYFIQHGVVSVLTKGSLGMKLM
DGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR
IGKKNSILMHNVQRDLNSGALNNQENEMIQEIVKYDREMVQQVHVAPWPRALSTPPPPFL
HDGLFHSPAHGQSSAIGTLQQAVAMTFCAPLQGNSAAAAASLLPSPRVVRRFQVTESVSD
GSVATSPTLSQFLAYGAAFAGPPAKSPLAFGGRSFQSGSGALSDPASGSQLSLGQQQHAA
GPALRPGAHKSTLSLQMGGLNQDARALSASQPSLPHEGGAAPPGAPSPPQPTRVSSASIG
PPQTPSGHPRSALPQRAVLPHQMSVGAYPVGSLPGSVQSFGAGAGGLGAGTGLGDSGLPK
KDSIVSLPDTDLIVIRSRLSSNL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggaggaggaggaggacggcgaggaggagcccaaatcccagcagccccgaccc
cctcgagtccccaccagctgggccggacgcgagcatcatgggagcagcgcagggaccgag
atgaagagatccacgcctggaggcggagccgcgtccattgcgcgcaagaagtccgacagc
cacgagctgtggctcctgccagaccaggactgcgcacctgtcggcggcgcagcctctgct
ctgttgtgccgggggaatgccgctgccggacgggacgcagtagtcccacaggccgtagca
ccgggagccaccggcatgatatgcaacaaaaacggagattgcatccgggacccgactagt
tcagggagcctctcctcgctcctctccaggcaggagaagcaggctgccgaagacgggaag
ctgcaggcggcgagcatggacggctccatcacttcagcggggcccctgcacgcacatggg
cccggcgccgaggtccggatgatcgagaagaaggactccagagtttccttctccaacgcg
ccgacgagcaaaggacagactccgagtcagcactccaggaattctgtcaccttcaccaaa
gcggaggacggctctctgatcgtgccggatgacggagactcccggggaaacccgacgtcc
atgcagcggcagttcagctccttgcttcagcccggggtgaacaagttctccctgcgcatg
ttcggcagccagaaggcggtggagaaggagcaagagcgcgtgaagtctgcggggaaatgg
attatccacccgtacagcgacttcaggttctactgggacttcaccatgctgatgttcatg
gtgggcaacctgatcatcatccccgtgggcatcaccttcttcaaggaggagacctccacg
ccgtggatcatcttcaacgtggtgtccgacaccttcttcctcatggacctggtgctgaac
ttccggacgggcatcgtgttcgaggacaacacggagatcatcctggaccccaagaagatc
cagaagaagtacctgcagagctggttcgtggtggactttgtgtcctccatccccgtggat
tacatcttcctcatcgtggagaggggcctggactccgagatgtacaagacggcccgggcg
ctgcgcatcgtccgcttcaccaagatcctcagcctgctgcggctgctgaggctgtccagg
ctcatccgctacatccaccagtgggaggagatcttccacatgacctatgacctggccagc
gctgtgatgcgaatattcaacctgatcgggatgatgctgctgctgtgccactgggacggc
tgcctccagttcctggtgcccatgctgcaggactttccgtccgactgctgggtctccctc
aacaagatggtgaacgactcgtggaccgagctctactccttcgccctctttaaggccatg
agtcacatgctgtgcatcggatacggacgccaggcgccggagagcatgtcggacatctgg
ctgaccatgctcagcatgatcgtcggggccacctgctacgccatgttcatcggacacgcc
accgcactcatccagtcgctggactcgtcccggaggcagtaccaggaaaagtacaaacaa
gtggagcagtacatgtcgttccacaaactcccggcagacttccgacagaagatccacgac
tactacgagcaccggtaccagggcaagatgttcgatgaggagagcatcctggaggagctc
aacgagcctctgcgcgaggaaatcgtcaacttcaactgccgtaagctggtggccaccatg
ccgctgttcgccaacgccgatcccaacttcgtgaccgccatgctcaccaagctgcggttc
gaggtgttccagccggccgattacatcatcagggagggaaccatcggcaagaagatgtac
ttcatccagcacggcgtggtcagcgtgctcaccaagggcagcctgggcatgaagctcatg
gacgggtcctacttcggagagatctgtctgctgacccgcggccggcggacggccagcgtg
cgggccgacacgtactgccgcctgtactcgctctccgtggacaacttcaacgaggtgctg
gaggagtacccgatgatgaggagggccttcgagacggtcgccatcgaccgactggacagg
atcggcaagaagaactccatcctgatgcacaacgtccagcgcgacctgaactcgggggcg
ttgaacaaccaggagaacgagatgatccaggagatcgtgaagtacgaccgcgagatggtt
cagcaggtccacgtggcgccgtggccgcgcgccctgtccacgccgccgccgccgttcctc
cacgacgggctcttccactcgccggcccacggccagagttcggcgatcggcacgctgcag
caggccgtcgccatgaccttctgcgcgcccctgcaggggaactcggcggcggcggcggcg
agcctgctgccgtcgccccgggtggtgcggcggttccaggtgacggagagcgtgagcgac
ggctccgtcgccacctctccgacgctgtctcagttcctcgcttacggcgccgccttcgcc
ggccctccagcaaagagtccgctggcgttcgggggccggtcgttccagtccgggtccggc
gccctctccgaccccgcctccggctcccagctctctctcggccagcagcagcacgccgcc
ggcccggcgctccggcccggcgcgcacaagagcactctctccttgcagatgggcggtctg
aaccaagacgccagggcgctgtcggcctctcagccctcgctgcctcacgaggggggggcg
gcgccgccgggggccccgagtccccctcagcccaccagagtctcctccgcttccatcgga
ccccctcagaccccgtcgggtcacccccggagcgctctgccgcagagggcggtgctgccc
catcagatgtccgtgggggcctaccccgtcgggtccctgccggggtctgtgcagagcttt
ggggccggggcgggggggctgggggcgggaacaggtctgggggactcgggactccccaag
aaagactccatcgtgagcctcccggacacggacctcatcgtaatcagatccaggctgtcc
tcaaacttgtga
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