Pseudoliparis swirei (Mariana hadal snailfish): 130194225
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Entry
130194225 CDS
T09868
Symbol
sh3rf1
Name
(RefSeq) E3 ubiquitin-protein ligase SH3RF1
KO
K12171
E3 ubiquitin-protein ligase SH3RF [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pswi01009
]
130194225 (sh3rf1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130194225 (sh3rf1)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130194225 (sh3rf1)
Protein phosphatases and associated proteins [BR:
pswi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130194225 (sh3rf1)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130194225 (sh3rf1)
BRITE hierarchy
Motif
Pfam:
SH3_9
SH3_1
SH3_2
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-RING_4
zf-C3HC4_4
zf-RING_11
Prok-RING_4
zf-Nse
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
130194225
NCBI-ProteinID:
XP_056271108
LinkDB
All DBs
Position
5:complement(26754587..26788473)
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AA seq
797 aa
AA seq
DB search
MDESVLLDLLECPVCLERLDATAKVLPCQHTFCRRCLQGILGSRGELRCPECRTLVECGV
DELPSNILLVRLLDGIKQRPRRAGPPGGPGVCANGTAGAAAARAWPERGGREPGAPGPQP
QRAQAKSALVRGTPQLPCAKALYNYDGKEPGDLKFAKGDVVVLRRQVDENWYHGEMGGVH
GFFPTNFVQVIKPLPPPQCKALYDFELKDKEADKDCLPFCKDDILTVIRRVDENWTEGML
GDKIGIFPISYVEFNSAARQLIDLDKPSDGDHGEGASSSSSNGVQRAAEKKNSKKRHSFT
SLTMSHKPALAPPPQRHSMEISGPVLISSSNPTAAARIGEMSGGLSCSAPSQVHICTTGL
IVTPPPSSPVTSATIFTFPSETSYTSISVDALPPPPPPPPQASADGATYSLAAGQRPSPS
ISDHSGRQRPTVYVAMFPYAPRKEDELELRKGEMFLVLERCQDGWFKGTSMHTGKIGVFP
GNYMSPISRTASGSSPQPKVPMSLCSPAGRGVTVVGPSAAPGLDFNKPLAVCSGAAATAT
QTATGQQPKVGSQMTVNQARNAVRTAACHGQDRPAAAAPSATPVTYPASSRAGAAMGCAA
ASLTPPNVSAASLEGDALRAAPAAARPPSLDKDVKREKKSLLKLLSSNKKKPRPSPPSSP
TLEAEQAAAAGEALHGADAPPSSGEPEPAAVSSSFSSSSATDSSHRKSSALDVCAPIAPP
PRQPCSSLLSQQHDARPIICERYRVVVSYPPQSEAELELKEGDIVFVHRKREDGWFKGTL
QRNGRTGLFPGSFVDGI
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtcggtgctgctggacctgctggagtgccccgtgtgcctggagcggctggac
gccacggccaaggtgctgccgtgccagcacaccttctgccgccgctgcctgcagggcatc
ctgggctcccgcggcgagctgcgctgccccgagtgccgcacgctggtggagtgcggcgtg
gacgagctgcccagcaacatcctcctggtgcgcctcctggacggcatcaagcagaggccc
cgcagggccggaccgcccggaggcccgggggtctgcgccaacggcaccgccggggcggcc
gcggccagagcgtggccggagcgcggcggcagggagccgggcgccccggggccacagcct
cagagagctcaggctaagagcgccctcgtgcggggcaccccccagctcccgtgtgccaag
gcgctctacaactacgacggcaaggaacccggagacctcaagttcgccaagggtgacgtc
gtcgtcctgcgccgccaggtggatgagaactggtaccacggcgagatgggcggcgtccac
ggcttcttccccaccaacttcgtccaggtcatcaagccgctgccgccgccgcagtgcaag
gcactatacgacttcgagctcaaggacaaggaggcggacaaggactgcctgcccttctgc
aaggacgacatcctgacggtgatccgcagagtggacgagaactggacagagggaatgctg
ggagataaaataggaatattccccatatcgtatgtcgagttcaactctgccgctcggcag
ctgatcgacttggacaagccgtcggacggcgaccacggcgagggcgcctcctcctcctcc
tccaacggcgtgcagcgcgcggcggagaagaagaacagcaagaagcgccactccttcacg
tcgctcaccatgtcgcacaagccggcgctggctccgccccctcagcgccactccatggag
atcagcgggccggtcctcatcagctccagcaaccccacggcggcggcgaggatcggggag
atgagcggggggctgtcctgcagcgcgccgtcacaggtacacatttgcacaactggacta
atcgtgaccccgccccctagcagccccgttacctcggcaacgatctttacgtttccctcg
gagacgagctacacgtccatctccgtggacgccctccccccgcccccccctcctcccccg
caggcctccgccgacggagcgacgtattcattggccgccgggcagagaccctcccccagc
atcagcgaccacagtgggagacaaagacccacagtctacgtggccatgttcccctacgcg
ccccgcaaggaggacgagctggagctgaggaagggcgagatgttcctggtgctggagcgc
tgccaggacggctggttcaagggcacctccatgcacacgggcaagatcggagtcttcccc
ggcaactacatgagccccatcagcaggacggcgtcgggcagcagcccccagcccaaagtt
cccatgagcctttgcagcccggcgggccgaggcgtcacggtcgtcggcccctccgccgct
ccgggcctcgacttcaacaagccgctcgccgtctgctccggcgccgccgccacggccacg
cagacggccaccggccagcagcccaaagtcggctcgcagatgacggtgaaccaggctcgc
aacgcggtcaggacggccgcgtgtcacggtcaggaccggcccgccgccgccgccccatcc
gccacgcccgtgacgtacccggcgtcctcccgggcgggcgccgcgatgggctgcgccgcc
gcctcgctgactccgcccaacgtcagcgccgcgtccctggagggcgacgccctgagggcc
gcgcccgccgccgcccgcccgccgagcttggacaaagacgtgaagagggaaaagaaaagt
ctcctgaagcttctgtcctccaacaagaagaagcctcgcccgtcgccgccctcctccccg
accctggaggcggagcaagctgcagcagccggagaggcgctccacggcgccgacgccccc
ccttcctccggcgagcccgaacccgccgccgtgtcttcctccttctcgtcttcctcggca
acggactcctcccaccggaagagcagcgccctggatgtgtgcgcgcccatcgctcctcct
cctcgccagccgtgctcctccctcttgtctcagcagcacgacgcgcgaccaatcatctgc
gagaggtaccgggtggtggtctcctaccccccccagagcgaggcggagctggagctcaag
gagggtgacatcgtgttcgtccacaggaagcgagaagacggctggttcaagggcacgctg
cagaggaacggccgcacggggctgttccccggcagcttcgtagacggcatctaa
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