Pseudoliparis swirei (Mariana hadal snailfish): 130194227
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Entry
130194227 CDS
T09868
Symbol
prdm1b
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130194227 (prdm1b)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
130194227 (prdm1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
zf-C2H2_6
C2CH-3rd_BIRD-IDD
zf-met
Zf-C2H2_ZNF451_C
zf-C2H2_jaz
zf-C2HE
Zap1_zf1
Motif
Other DBs
NCBI-GeneID:
130194227
NCBI-ProteinID:
XP_056271111
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All DBs
Position
1:5834057..5853150
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AA seq
718 aa
AA seq
DB search
MKLESTPGDMSRWREVDFVLNCTYIVPDQVSDPSFRLPKAMTSIPRNLTFEYSADNEVTG
VFSKEYIPQGTRFGPLQGLLYTKDNVPKQANRKYFWRIYSGGQLQNFVDGYDVHRSNWMR
YVNPARSLAEQNLVACQNGRDIYFYTIRPVEPSQELLVWYSQEFAQRLCGQQVDIKQKYT
SSDEDREPEYAKQHLPQQTWLTDRTKEEVKEERDEDGEENIDVEMLERDTPPVTPDDQIM
DFSKKVEKEESNRDPEDRGVVPSPKSEHREPGLGLSHPYLPDPHPALPSQHRNLPLHLHG
LYREGVSPYPIYPQSRPLQPNYQLLPPYGPHYPRLLLPSYSPPFPGMLPSRGSLRYGGYL
ATDGLPYPPIGPPTLLPVSLPYPPSSQGGLKELKANVSPPRGAPATPELSPLPKPDGQHH
SAEQSPSGFEEAMNLSMATIKSKHATRNGPGHKSLPYPLQKQNGKIKYECNICSKTFGQL
SNLKVHLRVHSGERPFQCNLCKKSFTQLAHLQKHHLVHTGEKPHECTVCHKRFSSTSNLK
THLRLHSGEKPYQCKLCNTKFTQYIHLKLHRRLHSGRDRPYRCPLCAQAFFHRFSLRIHQ
CSCCPAKSGAPVDVHVKQMAERFDASQEADVLAEAATAAQVEEAVERWLERTLEGEEKED
QREATLLLKALTVALNSPAAAVAQSATPASHHSPPLVYQERASVVHLHQRPRVKTEGQ
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgaagctggaaagcacaccaggagacatgagcaggtggagggaggtggactttgtcctc
aactgcacctacatcgtcccggaccaggtgtcggaccccagcttcagactgcccaaagcc
atgacctccatcccacgcaacctcaccttcgaatacagcgccgacaatgaggtgacgggc
gtgttcagcaaagagtacatcccacaggggactcgcttcggccccctgcaaggactcctc
tacaccaaagacaacgtccccaaacaggccaacaggaagtacttctggcggatttacagc
ggcgggcagctccaaaacttcgtcgatggctacgacgtccacaggagcaactggatgcgt
tacgtcaacccggcccgctctctggccgaacagaacctggtggcctgccagaacggccgg
gacatctacttctacaccatccgaccggtggagcccagccaggagctgctggtgtggtac
agccaggagttcgcccagaggctctgcggccagcaggtcgacatcaaacagaaatacacg
agttcggatgaagaccgcgagccggagtacgccaaacagcacctacctcagcagacatgg
cttacggacagaaccaaggaggaggtgaaggaagagagggatgaggacggggaggagaac
atcgacgtggagatgttggaaagagacacgccgccggtcacgcccgatgaccagatcatg
gacttcagcaaaaaggtggagaaggaggagagcaaccgagatccggaagaccggggggtc
gttccttccccgaagtccgaacacagagagcccggtctgggcttgagtcacccgtactta
ccggatcctcatcctgcgctgccatcccagcaccgaaatctccctctccacctccacggc
ctctacagggaaggcgtttcaccctaccccatttacccccaatccaggcccctccagccc
aactaccagctcctccccccctacggcccgcactatcctcgcctcctcctcccttcgtac
tcccctcccttccctgggatgctgccctcaagaggatccctccgatacggcggctacctg
gccaccgacggcctcccgtacccgcccatcggcccgcctactctgctgccggtgtccctc
ccctaccctccgtcttcgcagggaggtcttaaagaactcaaagcaaacgtgtcgccgccg
cgaggcgcgccggccaccccggagctctcccctctccccaagcccgacggtcagcatcat
tctgccgagcagtccccctccggtttcgaggaagccatgaatctgagtatggctacgatc
aaaagcaaacacgccacgcgcaacggccccggccacaaatcgctgccctacccactgcag
aagcagaacggaaagatcaagtatgaatgtaatatctgctccaagaccttcggacagctg
tcgaacctcaaggtccatctccgagtgcacagtggcgagagaccgttccagtgcaacttg
tgtaaaaagagcttcactcagctggcccacctccagaaacatcacctggtccacacgggg
gagaagccacatgaatgcacggtgtgtcacaaacggttcagtagcaccagcaacttgaag
acacacctccgcctccactccggggagaaaccctaccagtgcaagctgtgcaacaccaag
ttcacccagtacatccacctcaaactgcaccggcggctccacagcggccgcgaccgcccc
taccgctgcccgctctgcgcccaggccttcttccaccgcttctccctccgcatccaccag
tgcagctgctgcccggccaagtccggcgcgcccgtcgacgtgcacgtgaagcagatggcg
gagcggttcgacgccagccaagaggccgacgtgctcgcggaggcggcgacggcggcgcag
gtggaggaggcggtggagcgctggttggagcgcaccttggagggcgaggaaaaggaggac
cagagggaggcaaccctcctgctgaaagcgctgacggtggctttgaactcaccggcagcg
gccgtggcccaatcggcgacgccagcatcccaccacagccccccactggtctatcaggag
agggccagcgttgttcacctccaccaacgaccaagagtgaagactgaaggacagtga
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