Pseudoliparis swirei (Mariana hadal snailfish): 130194252
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Entry
130194252 CDS
T09868
Symbol
rexo1
Name
(RefSeq) LOW QUALITY PROTEIN: RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130194252 (rexo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pswi03009
]
130194252 (rexo1)
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
Pre-60S particles
RNases
130194252 (rexo1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EloA-BP1
REX3_middle
Motif
Other DBs
NCBI-GeneID:
130194252
NCBI-ProteinID:
XP_056271144
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All DBs
Position
5:1799102..1817395
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AA seq
1191 aa
AA seq
DB search
MLRSTGFFRGIDCPFYPENSEGKGGRNGCNRPYCHFRHSQQRRPSYGSPAAAAAAAEGPK
KRDLHPGKKEQGYDPFNPEVVRPQAQENGTSSDSGDLSGALDMVNKAIEEVRGEVEREKR
KLSRIGDEPYDPGQRKKASSPKAVKSKKKPASHMAYDPGSYQMTSGGYNPTPGCSKYTLD
ADAAGNNSSSMEYVPTAVRKPLSRKHAPSPPPSPKYSSSTSSPKVKYTLDNSKPSTDMEY
DPLSNYSAGIAAKSKKERGGGGKDVKTDGRKTLKLPPYIDPKKYTFSESDGESSGTEYRP
YLLSSLQQRKGHRGAPWSGVGKEKEKEASEEEEKKKVAGGAGHTSREKSGKFENAVGKVA
NKTSGGGGRDKGSTKTSNKDYAKKENKSHGKRDERNNAAGKTPDKDNKRSEEKIKREEKV
KMDSSKREKEAGNGARESKKAKILEKGRSKESNGRPEGRRREKEVKKTSKSSSSVGVKGG
AAHGKDRAKPDASSANGKRRGEKRRSASLSHADLFGDESPEEAAADEEDEEEEVLVRKSA
DALKRGNKRKASELTPSSSDEEEEEEEEAGHADFDFSGFQDLDLDSDPMEECLRIFNESK
DVRTEDKGRQLKQPSRLSEEEGGAEAALTTLFPGQKKRVSHCGARGSSDPPSAAWPNKRL
SAQEVCYRRLQTAQQQAAQLSAHVTSQSSSSSSSSSCSGERRRLAHRPQATPSRTGPAVA
SRLASSSRTQQTIKAQTTAGILPKTMSTVLQRRVAHTPTMKSGSMTRPTIPIEFGAKVPN
NVRQRYLHTFIDECVKFCPXSIDVVSQALDEEKLVYSRSSSKNIYLNVAVNTLKKLRSRS
TSCPAPAPKDPGSGANKRVQSHEEVLGGRAAATTSFTVNRMGKQLEEKLTGATLFRKLSS
YLLTEEQLQDNGYPRTNPEAPGKAAIFNQPERKPVTDPLNKVCCRCGAEYRINLNGSCVR
REECCFHWGRLRKNKVVGGWETNYSCCAASIGVPGCQVCKQHVQDGRKESFDGFVTTFSK
ALPPDGNGGVFALDCEMCYTKQGLELTRVTVIDSELKVIYDTFVKPDSKVVDYNTRFSGV
TEEDLESASITLRDVQAVLLSMFRAESILIGHSLESDLLALKLIHSVVVDTAIVFPHRLG
LPYKRALRNLMSEHLKRIIQDNVDGHDSSEDASACLELMFWKIKEDAKVKR
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgttgagatcaaccggcttcttccgaggcatcgactgcccgttctacccggagaacagc
gagggcaaagggggcaggaacgggtgtaacagaccgtactgccacttcaggcacagccag
cagcggcggccgtcctacgggagcccggcggcggcggcggcggcggcggaggggccgaag
aaaagagacctccatcccgggaagaaagaacaaggttacgaccccttcaacccggaggtc
gtgagaccccaagcgcaggagaatgggacgtcctctgactcgggcgacctcagcggcgct
ctggacatggtcaacaaggccatcgaggaggtccgcggcgaggtggagcgggagaagagg
aagctctcccgcatcggggacgagccgtacgaccccggccagaggaaaaaagcgtcttcg
ccgaaagccgttaagagcaagaaaaagccagcgtcgcacatggcgtacgaccccggcagc
taccagatgacgtccggaggttacaacccgacgcccggctgcagtaagtacacgctggat
gcagacgccgccgggaacaacagcagctccatggaatacgttcccacggcggtgagaaag
cctttgtcccggaaacacgcgccgtcccctcccccgagtccgaagtactccagcagcacg
tcctccccgaaggtcaaatacacgctggacaactcaaagccctccacggacatggagtac
gacccgctgtccaactactcggcgggaatcgcggcgaagagcaagaaggagcgcggcggc
ggcgggaaagacgtcaagacggacgggaggaagacgctcaagctgccgccgtacatcgac
cccaagaagtacacgttctccgagtccgacggggagagctccgggacggagtaccggccc
tacctgctcagcagcctccagcagaggaaaggccaccggggggcgccgtggagcggcgtg
gggaaggagaaagaaaaggaggcttcggaggaggaggagaagaagaaggtggcggggggg
gccggtcacacgagtcgtgagaaaagcggcaaatttgagaacgcggtcggaaaggtcgcc
aacaaaacaagcggcggcggcggccgagacaaagggtcgacgaagacctccaacaaggac
tacgcgaagaaggagaacaagagtcacgggaagagagacgagaggaacaacgccgccggc
aagacgcccgataaagacaacaagagatcagaggaaaagatcaaacgggaggagaaagtc
aaaatggactcgagcaaacgagagaaggaggcaggaaacggtgcgagggagagcaagaaa
gccaagatcctcgagaaggggaggagcaaggagagcaacggccgaccggagggcaggagg
agagaaaaggaggtgaagaagacgagcaagagcagttcgagcgtcggcgtgaaggggggc
gccgcacacgggaaagaccgagcgaagcccgacgcgagctcggccaatgggaagaggcga
ggggagaagcggcggagcgccagtctcagtcacgccgatctgtttggagacgagagcccg
gaggaggccgccgccgacgaggaagacgaggaagaggaagtgctggtgaggaagtctgcg
gacgcgttgaagagagggaacaagaggaaagcgtcggagctgacgccctcttcctccgac
gaggaggaggaggaggaggaggaggcgggtcacgccgacttcgacttctcgggtttccag
gacctggacctggactctgaccccatggaggagtgcctgaggatcttcaacgagtccaaa
gacgtgaggacggaggacaagggcaggcagctcaaacagccctcgcggctctcggaggag
gagggcggtgccgaggcggcgctgaccacgctgttccccggccagaagaagagagtctcg
cactgcggcgccagaggaagctccgaccctccgtcggcggcgtggcccaacaagaggctc
tcggcccaggaggtctgctaccggcggctgcagacggctcagcagcaggcggctcagctc
tcggcccacgtgacctctcagagctcctcttcctcctcctcctcttcctgctcgggggag
aggaggagactcgcccaccggcctcaggccacgccctccagaaccggtcctgcggtggcc
agtaggctggcctcctccagccggacccagcagaccatcaaggcccagaccaccgccggc
atcctgcccaagaccatgtccacggtcctgcagaggagggtggcccacacccccaccatg
aagagcggctccatgacgcggcccaccatccccatcgagttcggggccaaagttccgaac
aacgtccgccagcgctacctccataccttcatcgacgagtgcgtcaagttctgcccgtga
tcaatagatgttgtgtctcaggcgctggacgaggagaagctggtgtattctcgcagcagc
agtaagaacatctacctcaatgtggccgtcaacactctgaagaaactccggagcaggagc
acttcctgtcccgcgcctgcacccaaggatccggggtcaggggccaacaagcgggtccag
tcccatgaggaggtcctcggaggccgagctgccgccaccacgagtttcaccgtcaaccgg
atgggcaaacagctggaggagaaactcaccggcgccacgctgttccggaagctgagctcc
tacctgctgacggaggagcagctgcaggacaacggatacccgaggaccaacccggaggcc
ccgggcaaggccgccatcttcaaccagccggagaggaagcccgtcacggaccccctgaat
aaggtgtgctgccgctgtggagctgagtatcggatcaatctgaacggcagctgtgtccgg
agagaggagtgctgcttccactgggggcgattgcgtaagaataaagtcgttggcggctgg
gagacgaactacagctgctgcgccgcctccatcggggtcccggggtgccaagtttgcaaa
caacacgtccaggacggccgtaaagagtcgttcgatggcttcgtcaccacgttcagtaaa
gctctcccaccggacggcaacgggggggtgttcgctctggactgtgagatgtgctacacc
aagcagggcctggagctgacccgggtcaccgtcatcgactcggagctgaaggtcatctac
gacacgttcgtgaagcccgacagcaaagtggtcgactacaacacgcggttttccggcgtg
acggaggaggacctggagagcgccagcatcaccctgagggacgtccaggccgtgctgctc
agcatgttcagggccgagtccatcctcatcggacacagcctggagagcgacctgctggcc
ctgaagctcatccacagcgtggtggtggacacggccatcgtgttccctcaccgcctcggc
ctgccctacaaacgggccctgaggaacctgatgtccgagcacctcaaacgcatcatccag
gacaacgtggacggccacgactccagtgaggacgcgtccgcctgcctggagctgatgttc
tggaagatcaaggaggacgccaaggtcaaaagatga
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