Pseudoliparis swirei (Mariana hadal snailfish): 130194267
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Entry
130194267 CDS
T09868
Symbol
atg4b
Name
(RefSeq) cysteine protease ATG4B isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04136
Autophagy - other
pswi04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130194267 (atg4b)
04136 Autophagy - other
130194267 (atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pswi01002
]
130194267 (atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130194267 (atg4b)
03029 Mitochondrial biogenesis [BR:
pswi03029
]
130194267 (atg4b)
Peptidases and inhibitors [BR:
pswi01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
130194267 (atg4b)
Membrane trafficking [BR:
pswi04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
130194267 (atg4b)
Mitochondrial biogenesis [BR:
pswi03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
130194267 (atg4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
130194267
NCBI-ProteinID:
XP_056271167
LinkDB
All DBs
Position
5:complement(12202824..12210910)
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AA seq
394 aa
AA seq
DB search
MDAATLTYDTLRFGEFEDFPETSEPVWILGKEYNALTEKDEILSDVTSRLWFTYRKNFPP
IGGTGPTSDTGWGCMLRCGQMILGEALVCRHVGRDWRWARGQRQREEYISILNAFIDKKD
SYYSIHQIAQMGVGEGKPIGQWYGPNTVAQVLKKLAVFDTWSRLVVHVAMDNTVVIEEIK
RLCMPWLDTAGACCDPEASGELNGCPQGACALVEEETALWKPLVLLIPLRLGLSDINEAY
IETLKQCFMLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVDPCEDSQIPDETY
HCQHPPCRMHICELDPSIAAGFFCRTEDEFDDWCMRIRRLSCNRGGLPMFELVDSQPSHM
VSMDALNLTPDFSDSDRLERFFDSEDEEFEILSL
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagcaaccttgacatacgacacacttcgctttggagagtttgaagattttccc
gagacctccgagcctgtgtggatcttggggaaagaatacaatgcactcacagagaaagat
gagattttatcagacgtcacttcacgactgtggtttacatacagaaaaaacttcccaccc
attggtgggacaggaccaacgtcagacacgggatggggatgcatgttgcggtgcggccag
atgatcctcggcgaggccttggtgtgtagacatgtaggaagagactggagatgggccaga
ggccagagacaaagagaagaatacatcagtattctcaacgccttcatcgacaagaaagac
agctattattctatccatcaaattgcccaaatgggagttggagaggggaagccgatcggc
cagtggtacggacccaacacagtggcccaggttcttaagaagctggcggtgtttgatacg
tggagcagactggtcgtacacgtggcgatggacaacaccgtggtcatcgaggagatcaag
cgcctctgtatgccctggctggacaccgcgggggcctgttgtgacccggaggcatccggg
gagctcaacggctgcccgcagggggcgtgtgccctggtggaggaggagacggctctctgg
aaacctctggtcctgctcatccccctcaggctgggcctgagcgatataaatgaggcctac
atcgaaaccctcaagcaatgcttcatgctgccgcagtccctgggtgtcattggggggaaa
cccaacagtgcccattacttcattggttatgtcggagaagaactcatctatttagacccg
cacaccacacagcctgcggtggacccatgcgaagacagccagatccccgacgagacgtac
cactgtcagcacccgccctgccgcatgcacatctgcgagctggacccgtccatcgcagcg
ggtttcttctgcagaacagaagatgagtttgacgactggtgtatgcgcataagaaggctg
tcctgcaacagagggggcctgcccatgtttgaactggtggacagtcagccctctcacatg
gtcagcatggatgccctcaaccttactcctgatttctcagactccgacaggttggagcgc
ttctttgactcagaagacgaggagtttgagatcctttccctctga
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