Pseudoliparis swirei (Mariana hadal snailfish): 130194277
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Entry
130194277 CDS
T09868
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03030
DNA replication
pswi03410
Base excision repair
pswi03420
Nucleotide excision repair
pswi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130194277 (rfc4)
03410 Base excision repair
130194277 (rfc4)
03420 Nucleotide excision repair
130194277 (rfc4)
03430 Mismatch repair
130194277 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pswi03032
]
130194277 (rfc4)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130194277 (rfc4)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130194277 (rfc4)
DNA replication proteins [BR:
pswi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130194277 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
130194277 (rfc4)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
130194277 (rfc4)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130194277 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
130194277 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_assoc_2
AAA_16
AAA_22
AAA_11
KH_DUF2096_C
Gp44_lid
SLFN-g3_helicase
AAA_30
AAA_14
DUF815
Mg_chelatase
AAA_24
RuvB_N
ResIII
7TMR-HDED
AAA_5
AAA_19
DNAX_ATPase_lid
Cdc6_lid
14-3-3
AAA_7
Motif
Other DBs
NCBI-GeneID:
130194277
NCBI-ProteinID:
XP_056271185
LinkDB
All DBs
Position
5:complement(15012782..15020970)
Genome browser
AA seq
358 aa
AA seq
DB search
MQAFLKGATVESSRPPKDKAAAGPSTEKKAKLVPWVEKYRPKCIDEVAFQEEVVAVLKKS
LQGADLPNLLFYGPPGTGKTSTILAAARELYGPHLYRQRVLELNASDERGIQVVRQKVKN
FAQLTVAGTRPDGKPCPPFKIIILDEADSMTGPAQAALRRTMEKESRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLTNQIQEERLLDICEKENLKYTKESIAALVKVSDGDLRKAITFL
QSAARLNMDKEITEKAITDIAGVVPAKMIDNLFQICFTGTFEKLEVAVKNMVDEGYAATQ
ILSQLHESVIEQDLSDKQKSAITEKMAVVSKCLTDGADEYLQMLSLCSLIMQQASHNN
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcctttttgaaaggagcgacggtcgagtctagcagacctccgaaggacaaggca
gcagctgggcccagtacagagaagaaggccaagctggtcccatgggtggagaaataccgg
cctaagtgtattgatgaggtggccttccaggaggaggtggtagcagtgctgaagaagtct
ctgcaaggagcagatcttcccaacctgctcttctacggccctcctggaacaggaaagacc
tccaccatcctggctgctgccagagagctttacggtccacacctgtacagacagagggtg
ctagagctcaacgcctccgacgagcgaggcatccaggttgtcagacagaaggtgaagaac
tttgctcagctcaccgtggccgggacccgcccagatgggaagccgtgtcctccttttaag
atcattatcctagacgaggcggactccatgacagggccagctcaggctgctctcaggcgg
accatggagaaggagtcccgcaccacccgcttctgcctcatctgcaactacatcagcagg
attattgagccgctgacctccagatgttccaagtttcgcttcaaacctctgaccaatcag
atccaagaagagcgccttttggatatctgtgagaaggagaacctcaagtacaccaaagag
agcatcgcggcattggtgaaggtgtctgacggagacctgcggaaagccatcaccttcctg
cagagtgcggcacgcctcaacatggacaaagagatcacagagaaggccatcactgacata
gccggggtcgtccctgccaagatgattgacaacctcttccagatctgcttcacaggcaca
tttgagaagctggaagttgccgtgaagaacatggtggatgaaggctacgccgccacacag
atcctgagtcagctccacgagtctgtcatagagcaggatctgagcgacaagcagaagtca
gccatcacggagaagatggcggtggtgagtaagtgtctgacagacggtgcagacgagtac
ctgcagatgttgagtctgtgttcactcatcatgcagcaggcctcccacaacaactag
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