Pseudoliparis swirei (Mariana hadal snailfish): 130194325
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Entry
130194325 CDS
T09868
Symbol
her6
Name
(RefSeq) hairy-related 6
KO
K06054
hairy and enhancer of split 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03460
Fanconi anemia pathway
pswi04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
130194325 (her6)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
130194325 (her6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130194325 (her6)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130194325 (her6)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Hairy, Hairy/E(SPL)
130194325 (her6)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex binding factors
130194325 (her6)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hairy_orange
HLH
bHLH_NCOA
Spectrin_1st_PEPL
Motif
Other DBs
NCBI-GeneID:
130194325
NCBI-ProteinID:
XP_056271261
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Position
5:complement(18797509..18799535)
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AA seq
275 aa
AA seq
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MPSDMIEKSSSSPVAATPASMNTTPDKPKTASEHRKSSKPIMEKRRRARINESLGQLKTL
ILDALKKDSSRHSKLEKADILEMTVKHLRNLQRAQMTAALNTDPTVLGKYRAGFSECMNE
VTRFLSTCEGVNTEVRTRLLGHLASCMTQINAMNYPSQHQHQHQLPSVGPTHPSYGQPMQ
IPNSSPQVLPMNQVSCKGGSSPANLPSDATKVYGGFQIVPATDGQFAFLIPNAAFAPNGP
VIPVYANNVGTPVPLPAAVSPGAPSGNADSVWRPW
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgccttcagatatgattgaaaaatcgtcctcatctccggtcgctgcaaccccagccagc
atgaacacaactcccgataaacccaagacagcatctgagcacagaaagtcatccaagcca
ataatggaaaagaggagaagagcaagaatcaacgagagcttggggcagctgaaaactctc
atcctggatgcgctcaaaaaagatagctccagacactctaaactggaaaaggcggacatc
ctggagatgacggtgaaacatctccggaacctccagagggctcagatgaccgctgccctc
aacaccgaccccaccgtcttgggaaaatatcgcgccggtttcagcgagtgcatgaacgaa
gtcacccggttcctgtccacctgcgaaggtgtcaacaccgaggtcagaacgcggctcctc
ggccacttggccagctgcatgacccagatcaacgcgatgaactaccccagccagcatcaa
caccaacaccagctcccctccgtcggaccaacccacccctcctacggccagcccatgcag
atccccaactcatccccgcaggtcctgcccatgaaccaggtgtcctgtaaaggaggctcg
tcgccggctaatttaccatcggacgccaccaaagtgtacggcgggttccagatcgtgcct
gctacagacggacagtttgcattcctcatacctaatgcggcttttgcgccaaacggcccc
gttatccccgtttacgccaataacgtcggcacgccggtccctctaccggctgcggtttcc
cccggagccccgtcgggcaacgcggactcggtgtggcgaccctggtga
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