Pseudoliparis swirei (Mariana hadal snailfish): 130194329
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Entry
130194329 CDS
T09868
Symbol
vcam1b
Name
(RefSeq) vascular cell adhesion protein 1b isoform X1
KO
K06527
vascular cell adhesion molecule 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130194329 (vcam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130194329 (vcam1b)
04090 CD molecules [BR:
pswi04090
]
130194329 (vcam1b)
04091 Lectins [BR:
pswi04091
]
130194329 (vcam1b)
Cell adhesion molecules [BR:
pswi04515
]
Immunoglobulin superfamily
VCAM
130194329 (vcam1b)
CD molecules [BR:
pswi04090
]
Proteins
130194329 (vcam1b)
Lectins [BR:
pswi04091
]
I-type lectins (Siglecs)
130194329 (vcam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
C2-set_2
ICAM_N
Ig_C17orf99
Receptor_2B4
Izumo-Ig
Motif
Other DBs
NCBI-GeneID:
130194329
NCBI-ProteinID:
XP_056271265
LinkDB
All DBs
Position
5:complement(28185866..28197032)
Genome browser
AA seq
816 aa
AA seq
DB search
MSVGGIFLLTALLLMSLCCVQCFHVEVFPRRPLFKLGQRQQLVCQVQDCPTTPSLSWSVL
GDRPLAASVSTNRTWSVMTFDPVRMEHEGALLCRVGCGGGNKQIKTSVQVYSFPSAPLIR
GQDHLSLGAESILTCQVLDLYPSELLTLNWLRGEAVLQSIMGAPGSGSVRSEYRFTPLEL
DSGGNLSCRATMDLQELPAEDRTKVTTVALDLHYAPVVKTLSDSESVMAGSPLTLTCVVE
GNPEPSVTWSFGSADGGAEWRGEGRQLVLPAVRPSEAGRYHCEAQNSEGTRTAGVEVTVH
APPTNTSLSVSPGEEVLEGQQVTLTCHSDGYPPTMLVLRRKGVELQRSDPASSSLSFSLS
SAQLQDSAHYQCDASNQHGSQLVTRSVTVSAHPLQVEVSPAVSAAERGSGLVLTCGASGC
VHPPTFTWKTDLHRIVLRGTDQDGLSLLHLRDLDLQDEGGYSCEAECDSVFRTSTVQVQV
YSFPSDPVLESPGPVLLGQEVVLHCNVSSVLWANRMRLLWLSGNTTLMSESFGFSGSLQN
VSSVLQLQVQEDQQALTCRAELLLEDGGVWRSRRTGVPLQVHYPPRRTSLSVSPGEEVLE
GQQVTLTCHSDGAPPTTLVLRRMGVELQRSDPASSSSLSFSLSSVQLQDSAHYQCDASNQ
HGSQLVIKSVTVSAPPRNTTVLVLPSTVVQEGQNVTICCQTVSFPLSAMVLKKLTNGMEL
YSTDGTFLLVNVTARDSGLYQVNVTNDLGYQVKVFSIRVRVHTERSTSLPPSLSAVLVPV
ICVATGLAAAALLLDYLRRSRKKGFYQLPQSAPSSA
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcggtgggatctttcttctcacagctttgctgctgatgtcattgtgctgcgtt
cagtgcttccatgtggaggtgtttcccaggaggcctctgttcaagctggggcagcggcag
cagctggtctgccaggtccaggactgccccaccacgcccagcctgtcctggtctgtgctg
ggggaccggcctctggcggcctccgtcagcaccaacaggacctggtctgtgatgaccttt
gaccccgtgaggatggagcacgagggagctctgctgtgccgagtcggctgtggaggaggg
aacaagcagatcaagacctctgtgcaggtttactcattcccatcagcccctctgatcagg
ggccaggaccacctgagtctgggggcggagtccatcctcacctgccaggtgttagacctt
tacccctctgagctgttgaccctcaactggctcagaggtgaggccgtcctgcagagcatt
atgggagctcctggatctggctcagtccggtctgagtacagattcacccccctggaactg
gactcgggaggaaacctcagctgcagggccacgatggacctgcaggagctgccggctgag
gacaggaccaaagtcaccactgtggccctagacctgcactacgctcctgtagtgaagacg
ctctcagactctgagtcggtgatggccggctctccgctcactctcacctgcgtcgtggag
gggaaccccgagccgagcgtcacctggagcttcggctcagcagacggtggggctgagtgg
cgaggtgaaggccgccagctggtccttccagcggtgaggccgtctgaggccggacggtac
cactgtgaggcccagaactcagaggggacccggaccgccggggtggaggtcactgttcat
gctccgcccactaacacctccctctcagtgagtccaggtgaggaggtgctggagggccag
caggtgacgctgacctgccactcagatggatatccgcccaccatgctggtgctgaggagg
aagggggtggagcttcagagatctgaccccgcctcctcctcgctctccttcagcctctcc
tccgcccagctgcaagactccgcccactaccagtgtgatgcctccaaccaacatggatcc
cagctggtcaccaggtccgtcacggtctcagctcaccctctgcaggtggaggtgagtcct
gcggtctcagcagcagagaggggttcaggtctggtcctgacatgtggagcctccggatgt
gtccaccctcccacctttacctggaagacagacctgcaccggatcgtcctcagggggaca
gaccaggatggactgtccttgcttcacctgagggacctggacctccaggatgagggagga
tacagctgtgaggccgagtgcgactccgtcttcaggacctccaccgtccaggtccaggtc
tactcattcccgtctgatccggttctggagagtcctggtcctgtcctgcttggtcaggag
gtggtcctccactgtaacgtgagcagtgtcctctgggccaatcggatgagactcctgtgg
ctgtcggggaacacaacgctgatgtcagagtcgtttgggttctccggttccctgcagaac
gtctcgtctgtgcttcagctgcaggtccaggaggaccagcaggctctgacctgcagggct
gagctgttgctggaggacggaggtgtgtggaggtccaggaggaccggcgtgcccctgcag
gtccactatcctcccaggagaacctccctctcagtaagtccaggtgaggaggtgctggag
ggccagcaggtgacgctgacctgccactcagacggagctccgcccaccacgctggtgctg
aggcggatgggggtggagcttcagaggtctgaccccgcctcctcctcctcgctctccttc
agcctctcctccgtccagctgcaagactccgcccactaccagtgtgatgcctctaaccag
cacggatcccaactggtcatcaagtccgtcacggtctcggctcctccgagaaacaccaca
gtcctcgtcctgccgtctacggtggtccaggagggacaaaatgtcaccatttgctgccag
accgtcagctttccgctgtcagccatggtcctaaagaaactgaccaatgggatggagctg
tattcaactgatggcaccttcctattggtcaacgtcacggccagagactctgggctgtac
caggtcaacgtgaccaacgacctcggctaccaggtcaaagtcttcagcatccgcgtcaga
gttcacacagagagaagcaccagtcttcctccaagtctcagtgccgtcttggtcccagtg
atctgcgttgccactgggctagcagctgctgctctgctcctcgactacctgaggagatcc
aggaagaaaggtttctatcagctgccccagtctgccccatcttcagcctga
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