Pseudoliparis swirei (Mariana hadal snailfish): 130194626
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Entry
130194626 CDS
T09868
Symbol
cftr
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator isoform X1
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi02010
ABC transporters
pswi04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
130194626 (cftr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
130194626 (cftr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pswi02000
]
130194626 (cftr)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
130194626 (cftr)
Transporters [BR:
pswi02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
130194626 (cftr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
AAA_16
AAA_29
RsgA_GTPase
DUF87
MMR_HSR1
MeaB
AAA_21
AAA_23
T2SSE
FtsK_SpoIIIE
nSTAND1
ATP-synt_ab
Dynamin_N
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
130194626
NCBI-ProteinID:
XP_056271626
LinkDB
All DBs
Position
6:1235236..1275991
Genome browser
AA seq
1540 aa
AA seq
DB search
MQKSPVEDANFLSKYFFCWTAPLLRKGFQKKLELTDVYKAPSFDLADNLSERLEREWDRE
VVSAKNKPRLMRALARCFFGPFAFFGFLLYLGEVSKAVQPQLLGRIIASFDPFHAPERSQ
GYFLALGLCLLFTARFLLLQPAIFGLHHLGMQIRIALFSLIYKKTLKLSSRVLDKISTGQ
LVSLMSAHLNKLDESLGLAHFIWITPLQCILCVGLIWELIEVNGFCALASLMLLGIIQAW
LSQKMGPHRAVRGEMISRRLALTSEIMENIHSVKAYGWEDVMESIIKNIRQDEMTLTRKI
GSLRYFYSASYFFSAILVIVSAIVPHALSKGIILRRIFTTASYCMVLRMTLTRQLPGSIQ
MWYDTLALVKKIEEFLMKEEYRVLEYNLTTTDLELVNVSASWDEGIGELFEKIKQENKAG
GDLFFTNLYVTPVLRNISLQLGRGEMLAVAGSTGSGKSSLLMMILGELVPSEGTVRHSGR
VSFSPQTSWIMPGTIRDNILFGLTYDEFRYTSVIKACQLEEDFDLLPEKDKTHLLEGGVT
LSGGQRARLGLARAVYKDADLYLLDAPFTHLDIVTEKEIFEKCVCKLMASKARIVVTSKL
EHLKRADRILLLHNGECFFYGTFSELQAKRPDFSSLLLGMEAYDNVNAERRSSILTETLR
RVSVDETAGGFRGPETLRRSFRQPPAPPMISGSQAHPGGDGYPEKRKQSLILSPLAAARK
FSFIGNSQPASNAPQSTAMEDGARELSERRFSVVPEDDQVEEVLPRGNLYHHGLQHLTGQ
RRQSVLAFITKSQGQERREQIQSSFRKKLSVTPQCDLVAELDIYARRLSRDSIYDISEDV
DEADMEQCFADERENIFETTSWSTYLRYITTNQSLVYVLIFIVLVFFLEVAGSVIGIFLI
TDEIWRDGANPESPNFIDVQHPNASSPAAHLAVIVTPTSAYYIIYIYVATSESVLALGFF
RGLPLVHTLLTVSKRLHEQMLSAVLRAPMAVLNTMKTGRIMNRFTKDMATIDDMLPLVLF
DLIQLTLIVTGAIFTVSIIRPYIFIAVIPLATIFVALRKYFLRTGQQLKLLEAEARSPIF
SHLIISLKGLWTIRAFGRQSYFETLFHKALNTHTAAWFHYLATLRWFLFRCDIIFVLFFT
AAAFIAVGTNQDKPGEVGIIVALAMLILGTFQWAVITSITVDGLMRSVDRVFKFIDLPSE
EQPAVAGRGAPDLVIQNPHAAGCWPNRGRMDVQGLSAKYTEGGRAVLRDISFTVEGGQSI
GLLGRTGSGKSTLLSALLRLASTEGEISIDGVSWSSVPLHTWRRAFGVVPQRVFILTGTF
RMNLDPHERHSDEELWRVAEEVREPLKLDAPPPAAPPLTPSPPGGPEVGDRTVPRQAGLP
PGGRRQRAEQRPQAAAVPGALHPQQGPHPAAGRALGLPGPHHAAGPQEDAEALVLALHRH
PVGAPGGAAAGVPVLPDDRGQLHEELRLSPEASERDEPPEAGHEPLRQAPPLPHAAPPQL
QQAGAAAGRQDLLAAGGGRGGSARHSPLTHTHTHTQVRYR
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtcaccggtggaagacgccaacttcctctccaaatacttcttctgctggacc
gcgccgctgctcaggaagggcttccagaagaagttggagctgacggacgtgtacaaggcg
ccgtccttcgacctggcggacaacctctcggagagactggagagagaatgggacagagag
gtggtgtcggccaagaacaagccccggctgatgagggcgctggctcggtgcttcttcggc
cccttcgccttcttcggtttcctcctctacctcggggaggtgtccaaggcggtgcagcct
cagctcctcggccgcatcatcgcctccttcgacccgttccacgccccggagcgcagccag
ggctacttcctggccctgggcctctgcctcctcttcaccgcccgcttcctgctgctgcag
cccgccatcttcggcctgcaccacctgggcatgcagatccgcatcgccctgttcagcctc
atatacaagaagaccctgaagctgtccagccgagtcctggataagatcagcaccggtcag
ctggtcagtttgatgtcggcgcatctcaacaagctggatgagagtctgggtctggcccac
ttcatctggatcacccccctgcagtgcatcctgtgcgtgggtctgatctgggagctgatc
gaggtcaacggcttctgcgccctggcctccctcatgctgctcggcatcatccaggcctgg
ctgtcgcagaagatgggccctcaccgcgcggtgcgaggagagatgatcagccgccgtctg
gcgctcacctcggagatcatggagaacatccactcggtgaaggcgtacggctgggaggac
gtgatggagtccatcatcaagaacatcaggcaggacgagatgacgctgacgaggaagatc
ggctctctgcgttacttctacagcgcctcctacttcttctccgccatcttggtgatcgtg
tccgccatcgtgccgcacgcgctcagcaagggcatcatcctgcgccgcatcttcaccacc
gcctcctactgcatggtgctgcgcatgacgctgacccgccagctgccgggctccatccag
atgtggtacgacacgctggcgctggtcaagaagatcgaggagttcttgatgaaggaggag
tacagagtcctggagtacaacctgaccaccaccgacctggagctggtcaacgtctccgcc
tcctgggacgagggcatcggcgagctgttcgagaagatcaagcaggagaacaaggcgggc
ggcgacctcttcttcaccaacctctacgtcacgccggtgctgaggaacatcagcctgcag
ctggggaggggagagatgctggcggtggccggctccaccggctcggggaagagctcgctg
ctcatgatgatcctgggggagctggttccctcggaggggacggtccggcacagcgggcgc
gtctccttctcgccgcagacgtcgtggatcatgcccggaacgatccgcgacaacatcctg
ttcggactcacgtacgacgagttccgctacacctccgtcatcaaggcctgccagctggag
gaggacttcgacctgctgcccgagaaagacaagacgcatctcctggaaggaggggtgacc
ctcagcgggggtcaaagggcacgcctcggcctggccagggctgtgtataaagatgcggac
ctctacctgctggatgcacctttcacccacctggacatcgtgacggagaaagagatcttt
gagaaatgcgtgtgcaagctcatggcgtccaaggcgcgcatcgtggtcaccagcaagctg
gagcacctgaagcgggcggaccggatcctgctgctgcacaacggcgaatgcttcttctac
ggaaccttctcggagctgcaggccaagcggcccgacttcagctccctgctcctcggcatg
gaggcctacgacaacgtcaacgcggagcgccgcagctccatcctcaccgagacgctccgc
cgggtctccgtcgacgagaccgccggcggcttccggggcccggagacgctccgccggtcc
ttccggcagccgccggcgcctccgatgatatccggatcccaggcgcaccccgggggcgac
ggctacccggagaaacgcaaacagtccctcatcctcagtccgctggcggcggcgcgcaag
ttctccttcatcgggaactcccagccggcctcgaacgccccgcagtccacggcgatggag
gacggggcgcgggagctctccgagcggaggttctcggtggtgcccgaggacgaccaggtg
gaggaggtgctccccagggggaacctgtaccaccacgggctgcagcacctcaccgggcag
cgccgccagtccgtcctggcgttcatcaccaagtctcagggccaggagcgccgggagcag
atccagtcgtccttcaggaagaagctgtccgtcacaccgcagtgcgacctggtggccgag
ctggacatctacgcccgccgcctgtccagggacagcatctacgacatcagcgaggacgtg
gacgaggcagacatggagcaatgcttcgcagatgagcgggagaacatctttgaaactacg
tcatggagcacgtacctccgctacatcaccaccaaccagagcttagtctacgtcttaatt
ttcatcgtcctcgtcttcttcctcgaggttgctggttcagtcattgggattttcctcatc
actgacgagatctggcgggacggcgccaaccccgagtcgcccaacttcatcgacgtgcag
caccccaacgcctcgtcgcccgccgcccacctggcggtcatcgtcacgccgaccagcgcc
tactacatcatctacatctacgtggccacgtcggagagcgtgctggccctcggcttcttc
cggggcctcccgctcgtgcacacgctgctcaccgtgtccaagcggctgcacgagcagatg
ctgagcgccgtgctgcgggcgccgatggccgtgctcaacaccatgaagaccggccgcatc
atgaacagattcaccaaggacatggccaccatcgacgacatgctgcccctggtgctgttc
gacctcattcagctcacgctgatcgtcacgggcgccatcttcaccgtgtccatcatacgg
ccgtacatcttcatcgccgtcatcccgctggccaccatcttcgtcgccctcagaaagtac
ttcctgcgaactggacagcaactcaagctgctggaggctgaagcccgcagccccatcttc
tcccacctcatcatctccctgaagggcctgtggaccatccgggcgttcggccgccagtcg
tacttcgagacgttgttccacaaggcgctgaacacgcacacggccgcctggttccactac
ctggccacgctgcgctggttcctcttccgctgcgacatcatcttcgtcctcttcttcacc
gccgccgccttcatcgccgtgggaaccaaccaggacaaaccaggggaggtcggcatcatc
gtggccctggccatgctcatcctggggacgttccaatgggccgtcatcaccagcatcact
gtagacggactgatgcgttccgtggaccgcgtgttcaagttcatcgacttgccgtcagag
gagcagccggcggtggcgggccgcggggcgccggacctcgtcatccagaacccgcacgcc
gccggctgctggcccaaccgcggccgcatggacgtccagggcctcagcgccaagtacacc
gaggggggccgcgccgtgctcagggacatctccttcaccgtggagggggggcagagcatc
ggcctgctgggccgcaccggctcggggaagagcaccctgctgtccgctctgctgcgcctg
gcctccaccgagggggagatctccatcgacggggtctcctggagctccgtgccgctgcac
acctggaggagggccttcggggtggtgccgcagagggttttcattctcaccggaaccttc
cggatgaacctggatcctcacgagcgccacagtgacgaggagctgtggcgggtcgcggag
gaggtgagagaacccctgaagctggacgcacctcctcctgctgctcctcctctgaccccc
tctcctccaggtgggcctgaagtcggtgatcgaacagttccccgacaagctggacttccg
cctggaggacggcggcaacgtgctgagcaacggccacaagcagctgctgtgcctggcgcg
ctccatcctcagcaaggcccgcatcctgctgctggacgagccctcggcctacctggaccc
catcacgctgcaggtcctcaggaagacgctgaagcactcgttctcgcgctgcaccgtcat
cctgtcggagcaccgggtggagccgctgctggagtgccagtccttcctgatgatcgaggg
cagctccatgaagagctacgactctctccagaagcttctgaacgagacgagccacctgaa
gcaggccatgagcccctccgacaggctccgcctcttccccacgctgcaccgcctcaactc
cagcaagcgggcgccgccgccggccgccaagatctcctcgctgccggaggaggccgagga
ggaagtgcacgacactcgcctctaacacacacacacacacacacacaggttcgataccga
tga
DBGET
integrated database retrieval system
