Pseudoliparis swirei (Mariana hadal snailfish): 130194939
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Entry
130194939 CDS
T09868
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04110
Cell cycle
pswi04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
130194939 (smc1b)
04114 Oocyte meiosis
130194939 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130194939 (smc1b)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
130194939 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
130194939 (smc1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_29
PBS_linker_poly
Motif
Other DBs
NCBI-GeneID:
130194939
NCBI-ProteinID:
XP_056272140
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Position
6:3970819..3986813
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AA seq
1231 aa
AA seq
DB search
MGYLKQIDIENFKSWRGKNVIGPFVRFNCIIGTNGSGKSNVMDALSFAMGERVASLRVNH
LRDLVHGAHIGRPVRDAVRVALRCCDHEDRETVFSRSVNGDSSEYCINGAHVTLTKYIEE
LEKIGIVTKARNCVVFQGAVESIALKNPKERTKMFEWISQSRECAAEYEMKKKALLKAKE
DTQFHFNKKRSATVERKLVSHEKIEAQKYQTLVDDLHQNRLQLSLSELFWNEKCINVLSD
ILREKQLAAAAKNSTLGKEEQAVKTFKKEHGRLTREQQHIEKEIRAQEHVLSQCRSQYIK
AKVNASHHTKKAGEVRDALRKSQKLIAIKEQELAEERQEIFELESTWRNYEKQQQKKGAS
LRRDIELDEHQLERYKELKEMARRQGAVLNQQAERLHWEVRADSEKMAFDQRRKKEVEVT
IRSNQTQLEDLVRRAEKLEEYTKTCTSSLEEYRRLEESLGAELQRGRQRSEELKEELGQV
MEELGNAHLDSQESRCQQRRNELLDRLRSRFPETVFGRLSDLCSPVHKKYQLAVIKVFGR
FMNAIVVSTEKVARDCISFIKEEGAERETFLPIDYLDVSPLNERLREVPGAKMVVDVVQV
NNASGSAQLRKVVQFVCGNALVCETIKEARTVAFDGPVRLKTVALDGTLFTKAGVISGGS
SSLRTKARCWDEKDMLRLKARKDQLMAEMRDLMKLKRKDSDLKQTVAQAQGAQTRLKYSN
ADRDNIQKKNIPHCHAEISRLESELTNLDSQIRMQQESVELKEAEMKSLRDQIDQIEDTV
FFDFCAEIGVDRIGEYEQEHLKQQTELDRKRLEFESQCTRLNARLEYEQEQLTQQKNNLR
KMEETIDKGEKTMAEQREDEEKLLSAVEDGQNKQLELNDQLLSKKSQVAAAKAELDQKTQ
SLKETNKELAKLQREVMSAESALEQKRLFRHNMLLACKIQSLPIALLSGNLDEVSQVQLE
TESESTSTTLTIFEREAGLVIDYSDLDAELRGLEMEKEAEAFLERLRESLSSVEGVLHRT
TVPNLKALAKMREVKDMLQGVTDAFDASTQAARKCSREFEQVKDRRLDLFNRCFEHVCVV
IDQIYKRICRNNSAQAILSPENPDEPYLGGINYNCVAPGKRFMSMDNLSGGEKAIAALAL
VFAIHSFRPAPFFILDEVDAALDNTNISKVTSFIREESQENMQIIVISLKEEFFSKADAL
LGVYSDFEECMCSRMLTLDLRPYPLAVEDSD
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgggctatctcaaacaaattgatattgaaaacttcaagtcatggcgggggaaaaacgtc
atcggtccgttcgtgcgatttaattgcataattgggacaaatggttctggcaagtccaac
gtgatggacgccctgagcttcgccatgggggagcgggtcgcctccctgcgggtgaatcac
cttcgggacctggtccacggagcccacatcgggcggccggtccgggacgcggtccgcgtc
gccctgcggtgctgcgaccacgaggaccgggagaccgtcttctcccggagcgtcaacggc
gactcctccgagtattgcatcaatggcgctcatgtgaccctgaccaaatacatcgaggag
ttggagaagatcggcattgtgaccaaagctcgaaactgtgtggtgttccagggggcggtg
gagtccatagctctgaagaacccaaaggagaggaccaagatgttcgagtggatcagtcag
tcgagagagtgcgctgcagagtatgagatgaagaagaaggccctgctgaaggcgaaagag
gatacacagttccacttcaacaagaagaggtctgctaccgtcgagaggaaactggtttca
cacgagaaaatagaggcccagaagtaccagacgctggtggacgaccttcaccaaaaccgc
ctgcagctgagcctgtctgagctcttctggaacgaaaagtgcatcaacgttctgagcgac
atcctgagggagaagcagctggctgcagctgcaaagaacagcacactggggaaggaggag
caggcggtcaaaaccttcaagaaggaacatggacgtctcaccagagagcagcagcacata
gagaaggagatccgtgcccaggagcacgtcctgtcccagtgtcgatcccagtacatcaaa
gccaaagtgaacgcctcccatcacacaaagaaggcgggggaggtccgcgatgccctgagg
aagagccagaagctgatcgcgattaaagagcaggagctagcggaagagcggcaggagatc
tttgaactggagagcacctggaggaactacgagaagcagcagcagaagaagggagcctcg
ctgaggagagacatcgagctggatgagcatcagctggagcgatacaaagagctgaaggaa
atggcccggaggcagggggcggtcctcaaccagcaggcagagcggctgcactgggaggtg
agagcggacagcgagaagatggctttcgaccagcgccgcaagaaggaagtggaggtcacc
atcaggagcaaccagactcagctggaagacttggtacgcagagcagagaagctggaagag
tacaccaagacctgcacgtcgtccctcgaagagtaccgtcggctggaggagagcctcggc
gcggagctgcagcgaggccgccagcgcagcgaggagctgaaggaggagctgggccaggtg
atggaggagctgggcaacgcccacctggacagccaggagagccgatgccagcagcgacgc
aacgagctgctggaccggctgcgcagtcgcttcccagaaacggtgtttggtcgcctgtcc
gacttgtgcagccccgtccataagaagtaccagctggctgtcatcaaggtgtttggccgc
ttcatgaacgccatcgtggtgtccacagagaaagtggctcgtgactgcatctcgttcatc
aaggaagagggagccgagcgcgagaccttcctgcccatcgactacctggacgtgagtccc
ctgaacgagcggctgagggaggtgcccggcgccaagatggtggtcgacgtcgtgcaggtc
aacaacgccagcggctccgctcagctcaggaaggtggtgcagttcgtctgcggcaacgcg
ctggtgtgcgagaccatcaaagaagcgcggaccgtggcctttgacggacccgtgcgcctc
aagacggtggcgctggacgggacgctgttcaccaaggccggcgtgatctccggaggctcc
agttccctccggaccaaagcccggtgctgggacgagaaggacatgctgcggctgaaggcg
cgcaaggaccagctgatggcagagatgcgcgatttgatgaagctgaagcggaaggactct
gacctgaagcagacggtggctcaggctcagggcgctcagacccgcctcaaatactccaac
gcagacagggataacattcagaagaaaaacatccctcactgccacgcggagatttctcgt
ctggagagcgaactgacaaacctggactctcagatccggatgcagcaggagagcgtggag
ttgaaggaggcggagatgaagagcctcagagaccagatcgaccagatcgaggacacggtg
ttttttgacttctgcgccgagatcggcgtcgaccgcatcggagaatacgagcaggagcac
ctgaagcagcagacggagctcgacaggaagcggctggagtttgagagtcagtgcacccgc
ttgaacgcacggctggagtacgaacaagagcagctgacacagcagaaaaataacctccga
aagatggaggaaaccatcgacaagggggagaaaaccatggccgagcagagggaggatgag
gagaagctgctgtcagcggtggaggacggtcagaacaaacagctggagctgaacgaccag
ctgctgtcgaagaagagccaggtggccgctgccaaagcggagctggaccagaagacccag
agcctcaaggagaccaacaaagagctggcgaagcttcagcgggaggtgatgtccgccgag
tcggccctggagcagaagcgcctgttcaggcacaacatgctgctggcctgcaagatccag
agtctgcccatcgcgctgctgtcggggaacctggatgaagtcagccaggtgcagctggag
actgaatcagaaagcacgtcgaccaccttgaccatcttcgagagagaggcgggactcgtc
atcgactactctgacctggacgcagaactcaggggtctggagatggagaaggaggcggag
gccttcttggagaggctgagggagtccctctcctccgtagagggagtgctgcatcgcacc
acggtgccaaacctgaaggctctggccaagatgagggaggtgaaggatatgctacagggc
gtcaccgacgcgttcgatgccagcacccaagctgccagaaaatgcagccgggagttcgag
caagtcaaagaccggcgcctggacctcttcaaccggtgcttcgaacacgtgtgtgtcgtg
atcgatcagatctataaaagaatctgcaggaacaacagcgcccaggccatcctgagccct
gagaacccagacgagccgtacctcggaggcatcaactacaactgcgtggcgccggggaaa
cgcttcatgtccatggacaacctgtccgggggagagaaggccatcgccgccctcgccctg
gtgtttgccatccacagcttccgtcctgctcccttcttcatcttggacgaggtggatgca
gcgctggacaacacgaacataagcaaggtgaccagcttcatcagagaggagtcccaggag
aacatgcagatcatcgtcatctccctgaaggaggagttcttctccaaggccgacgctctg
ctgggagtctactccgactttgaagaatgcatgtgcagccgcatgctgaccctggacctg
cgcccctaccctctggccgtggaggacagcgactag
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