Pseudoliparis swirei (Mariana hadal snailfish): 130195007
Help
Entry
130195007 CDS
T09868
Symbol
rag1
Name
(RefSeq) LOW QUALITY PROTEIN: V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
130195007 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130195007 (rag1)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130195007 (rag1)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130195007 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1_pre-RNase_H
RAG1_ZnC2
RAG1
RAG1_DNA-bd
Motif
Other DBs
NCBI-GeneID:
130195007
NCBI-ProteinID:
XP_056272209
LinkDB
All DBs
Position
6:17227290..17235540
Genome browser
AA seq
867 aa
AA seq
DB search
MDEVDSGRLLTQNLLGEAEEVVGRSPAIKPGGPHQRPSQYLELWPGWKKQTQNLSTLFQA
APVLAIHLQEVAPAGKTKQEDHSPNQAQTWEEDTSPTHASALDFHSDREGAPVDTLDTVS
LSCHLTCHHCSPDTCPILVLCVCNNHALGPHCPACNLSCAIDDLAPPAKAFLSALYSLSL
LCPRSGCGKQVRIDAFKAHCLGHELDEQDDKQQSSELDNYLLTNKGGRPRQHLLSLTRRA
QKHRLRDMKNQLKAFADKEEGGDLKSVCQTLFLLALRSGKEHRQADELEATMQGRGFSLQ
PAVCLAIRINTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRAAEKELLPGFHQFEWQPAL
KNVSTSCSVGIINGLSGWASSVDDFPVDTITRRFRYDVALVSALKDLEEDILEGLRESGM
EDRACTSCFSVKIKESCDGMGDVNEKHGGGPAVPEKVVRFSFTVMSVSVLADDEEEEDVT
IFTEPKPNSELSCKPLCLMFVDESDHETLTAVLGPVVAERNAMKESNLILSMGGLPRSFR
FQFRGTGYDEKMVREVEGMEASGSTYVCTLCDSTRAQASENMVQHSITRSHEENLDRYEI
WRTNPFSESVDELRDRVKGISAKPFMETQPTMDALHCDIGNATEFYKIFQDEIGEVYQKF
KPSRVERRSWRAALDKQLRKKMKLKPVMRMNGNYARRLMTQEAVEVICELVPSEERREAL
RELMRIYIQMKPVWRATCPAKECPEQLCRYNFNSQRFADLLSSAFKYRYNGKITNYLHKT
LAHVPEIIERDGSIGAWASEGNESANKLFRRFRKMNARQSKTFELEDVLKHHWLYTSQYL
QKFMEAHKDSAKSLXATINQVESQDFM
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggtggacagtgggaggctgctcactcagaatctgctgggcgaggctgaagaa
gttgttggacggagcccagccatcaagcctggtggtccccatcagagaccctctcagtac
ctggaactctggcctgggtggaagaagcagacacagaatctgtccaccctcttccaagct
gctcctgtgctggccatccacctccaggaggtggcacctgctggcaaaacaaaacaagag
gaccatagtcccaaccaagcgcagacctgggaggaagacacatcacccactcatgcatct
gccctggacttccactctgacagagagggggcacctgtggacaccttagacacagtttct
ctgtcctgccacctgacctgccaccactgctctcctgacacctgcccaatccttgtcctg
tgtgtctgtaataaccacgctctgggacctcactgcccggcctgcaacttgtcctgcgcc
attgatgacctcgcgccgcctgccaaagccttcttatcagccctgtattccctgtctttg
ctctgtcccaggagcggctgtggcaagcaggtcagaatagacgcatttaaagctcactgt
ctgggccatgagctggacgaacaggacgataagcagcagtcatcagaacttgacaactac
ctgttaaccaataaaggggggagacctcgtcagcacctgctatcactgacccgccgtgcc
cagaagcatcggctgagggatatgaagaaccagctgaaggcgtttgcagacaaagaggaa
ggcggcgacctgaagtctgtgtgtcagactctgtttctgcttgcactgaggtctgggaaa
gaacatcgccaggcagatgagctagaggctacgatgcaaggcagaggctttagtttgcaa
cctgctgtgtgcttagccattcggatcaacactttcctgagctgcagccagtatcacaag
atgtaccgaactgtcaaagccaccagcggccgccagatctttcagcccctccacaccttg
cgggctgcagaaaaagagcttctccctggctttcaccagtttgaatggcagccagctctc
aagaatgtgtctacatcttgcagtgttggcattattaatgggctctctggatgggcttcc
tctgtggatgatttcccagttgacaccatcaccagacggttccgctacgatgtggctctg
gtgtcagcgttgaaggatctggaggaggatatcttggaggggctgagagagagtgggatg
gaagaccgtgcttgcacctcatgcttcagtgtcaagatcaaggaatcctgtgatggcatg
ggcgatgtcaacgagaagcacggtggaggaccagctgttcctgagaaggttgtgcgtttt
tctttcactgttatgtcggtctctgtcctggcagacgatgaggaggaggaagacgttacc
atcttcactgagccaaagccaaactcagaactgtcctgtaagcccctgtgcctgatgttt
gtggatgagtcagaccatgagacactcacagctgtcctggggcctgtagttgcagagcgt
aatgcaatgaaagagagcaacctcatcctgtccatgggcggacttcctcgttccttccgc
tttcaattcagaggcacaggatatgatgagaagatggtgcgcgaggtcgagggcatggag
gcctcagggtccacctacgtctgcactctttgtgactccactcgggcacaggcctctgaa
aacatggtgcaacactccatcactcgcagtcatgaagagaacctcgatcgttacgaaata
tggagaaccaaccccttttctgagtctgtagatgagctgcgcgacagggttaaagggatc
tctgccaagcccttcatggagacccagccaacgatggatgcattacattgtgacatcggc
aatgccactgagttctacaaaatcttccaggacgagatcggagaggtgtaccaaaagttc
aaacccagccgggtggaacggcgcagctggagggcagccctggataaacagcttaggaag
aaaatgaagcttaaaccagtgatgaggatgaatgggaactatgcccgcaggcttatgacc
caagaggctgtggaggtgatctgtgagctagtgccctcagaggagaggagggaggctctg
agggagctgatgaggatctacatccagatgaagccggtgtggcgcgccacctgccctgct
aaggagtgtcccgagcagctgtgccgctacaacttcaactcccagcgctttgccgacctt
ctctcctccgccttcaaatacaggtacaatggaaagataaccaattacctgcacaagacc
ctggcccatgtgcctgaaatcatagagagagatggatccatcggagcctgggccagcgaa
gggaacgagtctgcaaacaagctcttcaggcgtttccggaagatgaatgcacgtcagtcg
aagacctttgagcttgaggacgtgttgaaacatcactggctctacacctcccagtacttg
cagaagtttatggaagctcataaggactctgccaaatcactgtaagccaccattaaccaa
gtagagagccaggactttatgtga
DBGET
integrated database retrieval system
