Pseudoliparis swirei (Mariana hadal snailfish): 130195008
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Entry
130195008 CDS
T09868
Symbol
dennd4a
Name
(RefSeq) LOW QUALITY PROTEIN: C-myc promoter-binding protein
KO
K20163
DENN domain-containing protein 4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130195008 (dennd4a)
Membrane trafficking [BR:
pswi04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
130195008 (dennd4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
PPR_long
Papo_T_antigen
Motif
Other DBs
NCBI-GeneID:
130195008
NCBI-ProteinID:
XP_056272210
LinkDB
All DBs
Position
6:11998631..12023172
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AA seq
1726 aa
AA seq
DB search
MMEDKGPRVADYFVVAGLTDLSKPLEEELHFDEAGPTSVKPKAPITDVAVVIRSLGEEVP
PGFTCVESTPSGLSAELNGASLRGPQIFLCFKRGRDKPPLTDLGVLYEWKEKLKSGCHIV
HTTPSGRPANISSSSSQRIYMTYRRAPKSQPHTSLAVTDVCIIIPGKGETPPHTFCKVDK
NLNSSMWGSSVYVCYKKSLAKANTIAYKAGLLCRYPEEDYESFPLPESVPMFCLPMGATV
ECWPAHTKHSLPVFSTFVLTGASGEKVYGAAIQFYEPYSEESLSERQLSQLGLPSADGNR
SVYSNKSICLLSHWPFFQSFRSFLTFLYRYSISGPHALPIEKHISHFMQHVPFPSTHRPR
ILVQLSPHDSLILSQPVSSPLPLSGGSLSRLLLNLGPKNAATLLVLAVTEHKILVHSLRP
AVLTSVTEALVSMIFPFHWPCPYIPLCPLALSGVLSAPCPFIVGVDSRYFDLYVPPADIS
CVDLDTNTISQKDDKKALTWKILPRRACKHLQNTLNKLHQQLTEGGQLNREDVQMEHTVT
DVELNGGKSLHTLELEIQEAFLSFMAAILRGYRSYLLPITQAPSEKTTNASSLFDIQGFV
KSRERSHQRFYSLMTKTQMFSRFIEECSFVSDKDTSLAFFDDCVDKLFTTGVKMDSERPE
ETKLIELDESYRSEHTVYINPPELAPLPQGEEHPLCYSYSGFPVLNVELLEPLEGQHPPS
AGMASRHTSPASPTAIFRRSKQEIKSAQRMAKTYSSVPQMWSKCLLRHCYGLWFICLPGF
VGTCHSKVRALRTAYDVLRKMQDNKLQAPDEVCYRVLLQLCGQYSQPVLAVRVLFEMKKA
GVQPNAITYGYYNKAVLESTWPSTTRGGYFLWGKLRNVVLGVLQFKQAGRKQQTPHRDPH
LSDGSDLDTVSHGSLDSANDSAERTSIDTDFTKMDFSDDGFSTGGQSDQGYDSLSKEEER
MCNRESNSSLAVEDKGPRPSTLEVEVSIGSISPSARNCKSTDVRADNGNKISCPSSAILR
CGPRPKTERPKSLDLSGGQERFRLTVPHLSSTKQRHLAADRLHGVEEEEAETGKQKPLME
RSVSCSGTEERPGGSIVRSVGCSAGTVRXDGIESGFDPLSLMATDAVQERDEESTPTARR
DLAEEIEMYMHHGNSPLSSRTSSMNLENPSSPLFRSASSPHTSPRPSTLLLSNTHLPPPV
KSRERLRPSPSLPLGLCSKERERPSSLVSPSAPSPSSSLFSMDSLFTPSLDIFKSSFLSA
GKGVAEKASRFYSRLSSQTSLTQETNYDRISVSSLTSGEADCSSLLDIDSCLDPDGFTSP
QHGSVSRLRRSPVVGRINLGSPSDPNRVFRHNSFSGGLALPSFRPKTPRTPDSSPDTSRF
QPTPNYTIEVLMSSSSLCKTCDCLVYDEEIMAGWTANDSNLNSTCPFCGTAFLPFLSVEI
KDLRPLSRSFKKSNPVPEELTSASLNPEAKMSAANCPAQSPDAPPESSGSAGPTQVTVPY
LSPLVLWKELESLLVNEGDEAISCPTVVDQHPIVFWNLVWYYRRLELPSNLPALILASQH
CSHGDQTPQSVSSEDSKQVLVRIMWDNLKLHKDKLQPCYVLWNTHCANSLVRSGLCEEGQ
LFTVELLQGFVRSIKKSDVYQPMSQIIQLLGPELGFKRQRSLYRELLFLALVALGKNNIN
ISAFDREYKLAYDRLTPSQVKLTHNCDRPPGAGVMECRRTFVEPSL
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagataaagggcctcgtgtggccgattactttgtggttgccggccttacggac
ttgtccaaacctctggaggaggagcttcactttgacgaggccggccccacgtccgtcaaa
ccaaaagcccccataaccgacgtagctgtggtgatccgctccctgggtgaagaagtaccc
ccgggttttacctgtgttgaaagcaccccctcaggcctctctgcagagctcaatggagcc
agcctcaggggcccgcagatattcttgtgcttcaagcgaggcagagataagcctccactg
acagatcttggggttctgtatgaatggaaagagaaactgaaatctggatgtcacatcgtc
cataccacaccctcaggtcgccctgccaacatcagcagctcgtcgtcccaacgtatctac
atgacctaccgccgcgccccgaagagccagccccacacttcactggctgtcactgatgtc
tgcatcatcatccccggcaagggggagacgcctcctcacaccttctgcaaggtcgacaag
aacctcaacagcagcatgtggggatcctcagtctatgtttgttacaagaagtctctggct
aaggcaaacacaatcgcatacaaagcagggctgctgtgtcggtaccctgaagaggactac
gagtccttccccctgcctgagtccgtgcctatgttctgcctgcccatgggggcaacggtc
gagtgctggccagcacacaccaaacactccctgccagttttttccacatttgtcctgacg
ggtgcctctggagagaaggtttacggagctgccatccagttttatgagccttactccgag
gagagcctgtctgagcgtcagctctcacagctcggccttccaagtgctgacgggaacagg
agtgtttacagcaacaagagcatctgtctgctctcacactggccctttttccagtccttc
aggagctttctcactttcctctaccgatactccatctccggaccacatgccctgcctatt
gaaaagcacatctctcacttcatgcaacatgtgccgttcccttcgactcatagaccacgc
atcctagtgcagctgtctccacacgacagcctgatactcagccaacctgtgtcgtctcca
ctgcctctcagtggtggaagcctctccagattactactgaatctgggcccgaagaacgca
gccactctgctggtgctggctgtcacagagcacaagatcctggttcattccctgcgtcca
gctgtgctcacaagtgttacagaggcccttgtgtccatgatcttccccttccactggccg
tgcccgtacattcctctatgcccgctggcactgtccggtgtgctcagtgcaccgtgccct
ttcatcgtgggtgtggactcccgatactttgacctttatgttcccccggctgacatcagc
tgtgtggacctggacaccaacacaatctcccaaaaagatgacaagaaggctttaacgtgg
aaaatcttgcccaggagagcctgcaaacatcttcagaatactctgaataagctccatcag
cagctcactgagggcggtcagctgaaccgtgaagatgtgcagatggagcacacagttact
gacgtagagctcaatggtgggaagagcctccacactctggagctggagatccaggaggcc
ttcctgagcttcatggcggccattctacgaggctaccgttcctacctgctgcccatcacc
caagccccctctgagaagaccaccaatgccagctccctctttgacatccaaggcttcgta
aaaagcagagagcgctcccaccagaggttttactccctcatgaccaagactcaaatgttc
agccgcttcatcgaggagtgctccttcgtcagtgataaagacaccagcctggcattcttt
gatgattgcgttgataagctcttcaccactggagtcaagatggacagtgagcggccagag
gaaaccaaattgattgaactggatgaatcctaccgcagtgagcacacggtctacatcaac
cctccagagctggctcctcttccacagggagaagagcatcctctgtgctatagctactct
gggttccctgtgctgaatgtggagcttctggagcctctggagggacaacatcctccttca
gctggcatggcctcacgccacaccagcccagccagccccacggccatctttaggcgctcg
aaacaggagatcaaatcagctcaaaggatggccaaaacatattcctctgtgcctcagatg
tggtccaagtgtctgctgcgccactgctatggtctttggttcatctgcctcccagggttt
gttggcacctgccactcaaaggtgcgggctctgcgcacagcgtacgatgtgctgagaaag
atgcaggacaacaagttgcaggctccagatgaggtgtgctaccgagtgttgctgcagctg
tgtgggcagtatagccagccagtcctcgcagtaagggtgttgtttgagatgaagaaagct
ggtgttcaacccaacgccatcacctacgggtactacaacaaggcggtgttggagagcacc
tggccctcgaccaccagaggaggctactttttatggggaaagctgaggaatgtggtttta
ggtgttctccagttcaagcaagcagggagaaaacaacagacgccacacagagatcctcat
ctttcagacggcagtgatcttgacacagtcagtcatggcagtttggacagtgccaatgat
tcagctgagcgtacttccatcgacaccgacttcacaaaaatggatttcagtgatgatgga
ttcagtacaggtggacagtcagaccaaggctacgattccctctccaaagaagaggagagg
atgtgcaacagagagagcaacagctccctggcggtggaagacaaaggacctcggccgtcc
acacttgaggtcgaggtttcaatcggcagcatctctccttctgcaagaaactgcaaatca
acagatgtcagagctgacaatggcaacaagatttcctgtccctcaagtgccatccttcgg
tgtggacctcggccaaaaacagagaggccaaaatctctggacttgtctgggggacaagaa
cgttttaggctcaccgtccctcaccttagctcaacaaagcagcgtcacctcgctgccgac
agactgcacggggtcgaagaagaggaggcagagaccggtaaacagaaacctctgatggag
agaagtgtcagctgcagcggtacagaggagaggccaggtgggtccatcgtgaggagtgtc
ggctgcagtgctgggactgtgaggnaggacggtattgagagcgggtttgatcccctgtcg
ttgatggcgacggatgcagtacaagagcgtgatgaggagagcacgcccacagcccgccgc
gaccttgctgaagaaattgagatgtacatgcatcatggcaacagccctctgagcagccgt
acatccagtatgaacctagagaacccctcaagccctttgtttagatctgcctcttctcct
cacacctccccacgaccctccaccctgctcctctccaacacgcacctcccgccacccgtg
aaatccagggagaggctgaggccgtcaccgtctcttcctctgggtctctgttccaaagag
agggagaggccttcctctctggtgtcaccctccgcacctagtccatcatcctcattgttc
tccatggattcactgttcaccccatctctggacatctttaagagcagctttttatcagca
gggaagggcgtggctgagaaggccagccgcttctactctcgtctgtcctcccagacttca
ttaacacaggagacaaactatgaccgtattagtgtatcctcactgacctcaggagaggca
gactgctcttcgctgcttgatattgactcctgtctggacccagatggctttacctctccc
cagcacggcagtgtatcccgactcaggaggagcccggttgtgggtcgcatcaacctgggc
agccccagcgaccccaacagagtgttcagacacaactccttctctggtggtttggcactt
ccttccttccgtcctaaaacgcctcgcactccagattcctcccccgacaccagccgcttc
caacccactcccaactacaccatagaggtgctgatgtccagctcctcactttgtaagacg
tgtgactgtctggtgtatgacgaggagatcatggcgggctggacagcaaacgactccaat
ctcaacagcacttgtcccttttgcggcacagccttcctgcctttccttagtgtagaaatt
aaagacctaagaccactgagcaggtcttttaagaaaagtaatcctgtaccagaagagctc
acatcagcatctctgaatcccgaggccaaaatgtctgcggcaaactgcccagctcagtcg
cccgatgctcccccggagagcagtgggagtgctgggccgactcaggttacggtgccctac
ttgagccccctggttctgtggaaggagctggagagcctgctggtaaatgagggcgacgag
gccatttcttgccccactgttgtcgaccaacaccccatcgtcttctggaacctcgtgtgg
tactacaggaggctggagctgccgagtaacctgccggctctcatcctggcctctcagcac
tgcagccacggagaccagactccccagagcgtttcttccgaggacagtaagcaggttctt
gtgaggattatgtgggacaacctgaagttgcacaaagacaaactccaaccctgctatgtc
ttatggaacacgcattgtgcaaactccctggtgcgctcggggctgtgtgaagaaggccag
ctcttcactgtggagctactgcagggttttgtgaggagcataaagaagagtgatgtctat
cagcccatgagccagatcatccagctgctggggccagagctgggttttaaaagacagagg
agcctctacagagagttattgttcctcgctctggtggctttgggaaagaataacattaat
atcagtgcttttgaccgggagtacaagttggcatatgaccgcctcacccccagccaggtg
aagctaacacacaactgtgaccggccccccggagcaggggtcatggagtgcagaaggact
tttgtggagcccagtctgtaa
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