Pseudoliparis swirei (Mariana hadal snailfish): 130195041
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Entry
130195041 CDS
T09868
Symbol
nlrc5
Name
(RefSeq) LOW QUALITY PROTEIN: NLR family, CARD domain containing 5
KO
K22615
NLR family CARD domain containing 5
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pswi04054
]
130195041 (nlrc5)
Pattern recognition receptors [BR:
pswi04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
130195041 (nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_6
NACHT
NLRC4_HD2
LRR_4
LRR_NXF1-5
AAA_30
LRR_R13L1-DRL21
AAA_22
NOD2_WH
Motif
Other DBs
NCBI-GeneID:
130195041
NCBI-ProteinID:
XP_056272264
LinkDB
All DBs
Position
6:complement(23377007..23422504)
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AA seq
1865 aa
AA seq
DB search
MDKPPLPGPNPVGVSPQPEREALCQKSHVFRKSETKTFPATPFGFVWKEVLLWLQRDRSL
ESRLMSVAGYGNSVCEHSTPSVTDGKPSDQLIKRPRIDYXTQYIREVMHFLQTRWERLSE
HLVRQVQLENVWVGLRTANRGRPDQTPGSADKGAKTPGLSLNSESNGEYGSIDSRVTLES
FLQGCTRKVTVLLGPAGSGKTLLMSCLGQQWAHGLGPIPSSYLFVLLEFRQLNVLSRPLS
LSELLFQHYVPIKESNHGKEAIVDYLLSNPEQSCWXYDEFHSKLAKQEVQTEQFDPEKPL
PVADLISGLLNRQLLPGCTVMVTCRLRNVIDLEGISDKVGQLLGWDCHEIKEYVDNFFGD
KGHSANRSLGVQAAELLLSSRHLLAMSSLPALCNICCIYLEHLLLKSTDPGRAEIPEERG
GETRRKACGKEIKGGGRGEEGNMTTDGTNCRAQLPLTQAQIPSTLTQVYLGVLDSFLSRD
PDTIGSNDELDTMRLPQSLLSQHRCELCELSWNGLEDSKFLFMEEDISQEVLQFSIKIGL
FSQVELRLEDGMLVNSYCFTHLTLQEFLAALRIMTSADVSDTQLKKRFSLRTRWTTKSDQ
RTVFTDSLCLFVCGLASPHCTAALIQFTRTPGGTGGPSWVQKRQSLVLKLLKNLCHNNTL
TGPKILELCNCVQESQDHQLAQQVVGARPTLELRNIQLLPNDIHALAFVFNXIVYNVIGL
DFGACTMESECLDVLPRCQYIHYLCFRRCKDGDKFAEKLSSILPKLTTLRKLEFCAASLT
ATGAASLASALPNCLEVTEINLSDNDLKDDGIKHIADIFTKQPRLALVKLGRNHSSLKAV
DYLIGKMSSSLNIQQIHADGLKELQVTFSQSSDLISQTAESKPTICLLNQKWSKPDMQTL
SKSLTRCPALSVLDISGGHLDVETLRTLTQYLPKFNITQKIVANDSCSTVEDLLILTALL
SDCPAVVELRIRLQIPVQASIVFSGGREERNEVSKLLCSSLEEEQRTTLKAVFSVLSSAG
LLPTHLERVWSSLGTSPDVTVLDLSSNCLGSRGLRMLLDFLPRLRRIREINASNNRIGLE
SVGLLAAALCSHKNATDIHISDGDGEQVILKFGPFKRDEKQQKKIFRVNHSSLPPSHMTT
LCRRLVQCRSLLELDLSHSSLSDEAIENLLKVLPRITSLQRLDVSHSIASTTGALMLVRC
LTVSQRVTSLDLRPQAASFIQFDSVKEEQASCRLTHCSLKGDTLERLMEILQRGPQLSVL
DLSCNQLGDEGVKRVVDSLQGLQITSYVNLSNNGLTQQGMTDVAHTLSTCNSVSGVEVSL
GAEEKCLVXFTQHGGSVKTLRVRDSRLERVHLVRLAEIVSISSGPTQLEFKNNSLQSGWI
EDFVTLLSRSHRAFSVSFRERWIRSEEAVTLLCRCLDVSSNIRTIRVHHTTLHLSLEKST
EHTSLSLINCAVDGYHLASMKSVISRSPLLTELDFSHNSLGLEGAEVLCSVLPWLPNLSS
LSIGSKEASVTVDEKLSEALLQAAAIQCLNLSGHAISDTGAQMMSSMLPRLRSLNLSHCE
WSASGGLQLIKALGECVSLEGLCLDGLWLNEESRTCLAQALRKINSIRRLKLNEIATEIG
PSQANGVLNVIAATEGLTQTQEIELDGWKMADRGIEELARVLPVWTELRKISLSKNLISD
QSGDVLLEALHSCTHLEELHLPRNSLGDLTAARMALVLPSLTHITVLDISENRIGREGSV
SLAKAIMCMKNLTKIYLTSVGTPELCPVAAGLAHCPLLQDVGLGWNNCGDNVALELVRVM
PLCQRLMRIDLESNAVSASGAEALARASESCPALQIIRLWRNKLSPSEALRLSLRERRLN
FSSTS
NT seq
5598 nt
NT seq
+upstream
nt +downstream
nt
atggacaagccgcccctgcctggacctaacccagtaggtgtgtcgccacaacctgagaga
gaggctttgtgccagaaatctcacgtttttcgcaaaagcgaaaccaaaacgttcccggca
actccctttggtttcgtttggaaagaagtgctactttggttgcagagagatcgcagtctg
gagtctaggctcatgtcagtggctggatatggaaatagtgtttgtgaacattctactccc
agtgtaacggatgggaagccttcagaccagctcatcaagcgtccacggattgattactga
acgcagtacattcgggaagtgatgcattttctgcagacgaggtgggagcggctcagtgag
cacctggtgaggcaggtgcagctggagaacgtgtgggtcggcctaagaacggcaaaccga
ggccgacctgatcaaacccctgggtcagcagacaaaggggccaaaacaccaggtctttca
ctgaactcagagtccaatggggaatatgggtctatagattccagagtgacattggagagc
ttcctccagggatgtacaaggaaggtgacagttctccttggcccagctggatcaggaaaa
actctgctgatgtcttgtttaggacaacagtgggcacatggactaggcccgatcccttca
tcttacctgtttgtgctgctggagtttcgtcagctcaacgtactgtcccgtcctctctcc
ctgtctgagctgctattccaacactacgtccccataaaggagagtaaccacggaaaggaa
gccattgtggattacctcctttccaatccagagcaaagttgttggnnctacgacgagttt
cacagcaaactcgccaaacaagaggtgcagacggagcaatttgacccagaaaagcctttg
cctgttgcagacctcatatcagggctgttaaatcgtcagcttctcccaggatgtactgtg
atggtcacttgtcgtctacgcaatgtcatcgatttggaaggcatatcagataaagtcggg
cagctgctcggttgggactgccatgagatcaaggagtatgtggacaacttttttggtgat
aaaggtcactcagccaacaggtctcttggggtgcaggcagcagaactccttctttccagt
cgacacctactcgccatgtcatccctccctgccctctgcaacatctgctgcatctatctg
gagcatttactgctgaaaagtacagacccaggaagggccgagataccggaagaaagagga
ggagagacaaggagaaaagcgtgtggaaaagaaataaaaggaggcggaagaggagaagag
ggcaacatgacgacagatggaacaaactgtagagcccagctacctctcacacaagcccag
attccctccaccctcacccaggtctacctcggcgttctggattcgtttctgagccgtgat
cctgatacaataggaagcaatgacgagctggataccatgagacttccccagagtcttctg
agtcagcatcgatgtgagttgtgcgagctgtcctggaacggcttagaggacagcaagttc
ctcttcatggaagaagacatttctcaggaggttttgcagttttcaatcaagatagggctc
ttctcacaggtggagctcagacttgaggatgggatgcttgtcaactcctactgcttcact
catctgactttacaggagtttttggctgcactcagaatcatgacgagtgctgatgtcagt
gacacgcagctcaagaagagattcagtctgagaactcgctggacaaccaagtcagaccag
aggacagtctttacagactccctgtgcctgtttgtatgtggtctggcctccccacactgt
actgcagccttaattcaattcaccaggacccctggtggaacaggaggtccaagttgggtc
caaaaacgacaaagccttgttctgaaactgctaaaaaacctttgtcacaacaacaccctg
actggaccgaagatattggagctatgcaactgtgttcaggagagccaggaccaccaacta
gctcagcaggttgtgggtgcgagacccaccttggagctgcgcaacatccagcttctacca
aatgatattcatgctctggcttttgtatttaactgaattgtttataatgtcattggattg
gactttggagcatgcacaatggagtccgagtgtttagatgtcctgcccaggtgtcagtac
attcactacctctgttttcgcagatgcaaggatggcgacaagttcgctgagaagttgtcc
tccattttgccaaagttaaccaccctgaggaaacttgagttctgtgctgccagtctgacg
gccaccggagcggccagtttggcctctgctctaccgaactgtctagaagtcactgaaatc
aacctcagtgacaacgatctgaaagacgatgggatcaaacacatagccgatatatttacc
aagcaaccgagactggctttggtgaagctgggtcgaaaccacagctctctgaaggcagtg
gactacctcatcgggaaaatgtcttcgtccttgaacatccagcagattcatgcagacgga
ttgaaggaattgcaggtcactttctctcaaagctctgatttgatcagccagacagctgag
tctaaaccgacaatctgcttgttgaaccagaaatggagcaagccggatatgcaaacactt
tcaaagtcattgacacgttgccctgccttgtctgtcctggatatttctggaggccacttg
gatgttgaaactctgaggacgctgactcaatatttgccgaaattcaacatcacccagaag
atcgtggcgaatgacagctgctcaacagtggaggatttgctgattctgacggctctgctg
tctgattgtcctgctgtggtggagctccgtatcagattacagattcctgttcaggcgtcc
atcgtgttttctggagggagagaagaaaggaatgaagtatctaaactgctctgttcctca
ttggaagaagagcagagaactacactgaaggctgtgttctcagttctgtcctcagctggt
ctgctgccgactcatctggagagagtgtggagcagtttgggaacctctcctgatgtcact
gtgctggatctgtccagtaactgcttaggcagcagaggtctgaggatgctgttggacttc
ctgccccgtctcagaagaatccgcgaaataaatgccagtaacaataggattggcctggag
agcgtggggctgctggctgctgctctgtgctcccacaaaaacgcaacagacatccacatc
agtgatggagacggagagcaggtgatcctgaagtttggccccttcaaaagggatgagaaa
cagcagaaaaagatcttcagggttaaccacagcagcctcccaccatcccatatgaccaca
ctctgtagacgactggtccagtgtcgctcacttttggagttagatttgtctcacagctcc
ttgtcggacgaggccatcgagaatctgctgaaggtcctgcccaggatcacgtcgctgcag
agactcgatgtcagccacagcatcgcatccacaactggagctctgatgctggtcagatgt
ttgaccgtcagccagcgagtcacctcactggatctcaggcctcaggctgcgtccttcatc
cagtttgacagtgtgaaagaagaacaagccagctgcaggttaactcattgcagcctgaag
ggtgacaccttggagagactgatggagatactccagcggggtcctcaactgtcggtcctg
gatttatcttgtaaccaactgggagatgagggagtgaagcgtgttgtggattctctacaa
gggcttcaaatcaccagctatgtaaacttgagcaacaatggcctgacgcagcaggggatg
acggacgtggcccacacactgagcacctgtaacagcgtctctggtgtagaagtcagtttg
ggagcagaggagaagtgcctcgtctgattcacgcagcatggtggtagtgtgaaaacactg
agggtcagagacagtcgtttggaacgcgtccatctggtccgactagcagagatcgtgtct
atcagttccggtccaacccaactagagttcaaaaacaactcgctgcagtcgggttggatt
gaagactttgtgacgctgttgagcagaagtcacagagcattcagcgtcagctttagagaa
cgttggatccgatctgaggaagctgtgactctgctgtgccgctgtctggacgtcagcagc
aacatacgcacgatcagggttcaccacaccacgctacatctgtctttggagaagtccact
gaacacacttctctcagcctcataaactgtgcagtagatgggtatcaccttgcctcgatg
aagagcgtcatctcgaggtctcctttactgactgagctggatttctcccacaacagcctg
ggcttagagggagctgaggttctctgttctgtcctgccctggctgcctaatctctcttct
ctcagtattggttccaaagaggcttctgtgactgtggatgagaagctgtcagaggccctg
ctgcaggctgcagccattcagtgcttaaatctgtccggtcatgcgattagtgacacagga
gcccagatgatgagcagcatgttgcctcgcctaagatcactcaatctgtctcactgtgag
tggtcagcgtccggagggctgcagcttatcaaagcactgggagagtgtgtcagtctggag
ggcctttgtctggacggcttgtggctcaacgaggagagcaggacgtgccttgcacaagca
ctaaggaaaatcaactctatacgcagactcaagctaaatgagattgccacagaaatagga
ccatcacaagcaaacggtgtgctcaatgtcatcgctgctacggagggactcacacaaact
caggagatagagttggatggctggaagatggctgatagaggaatagaagagctggccaga
gtcctacctgtctggacggagctcagaaagatcagtctatcaaagaacctcatcagcgac
cagtcgggagacgtgctgctggaggctttgcacagctgtactcacctggaagagcttcat
ctgcctcgcaacagccttggggatctcacagctgctaggatggcccttgttctcccatca
ctgacacacatcactgtgctggatatttccgagaacaggattggacgtgaaggatcggtg
agcctggccaaagcgataatgtgcatgaagaacctcaccaagatctatctgacctccgtg
gggactccagagctgtgtcctgtcgcggccggtctggcccactgtcccctcctacaggat
gtcggcctgggatggaataattgtggcgataatgtggcattggagctggtcagagttatg
cctctctgtcaaaggctgatgaggatagatctggagtcaaacgctgtgagtgcttctgga
gcagaggccctggctagagcctcagagtcgtgtcccgctctgcagatcatcaggctgtgg
aggaacaagctctcccccagtgaggccctgaggctcagtctgagggagaggaggctgaac
ttctcatccacctcatga
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