Pseudoliparis swirei (Mariana hadal snailfish): 130195062
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Entry
130195062 CDS
T09868
Symbol
cspg4
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pswi00535
]
130195062 (cspg4)
04091 Lectins [BR:
pswi04091
]
130195062 (cspg4)
Proteoglycans [BR:
pswi00535
]
Cell surface proteoglycans
Others
130195062 (cspg4)
Lectins [BR:
pswi04091
]
C-Type lectins
Others
130195062 (cspg4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
DAG1
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
130195062
NCBI-ProteinID:
XP_056272317
LinkDB
All DBs
Position
6:complement(5697924..5777325)
Genome browser
AA seq
2324 aa
AA seq
DB search
MRATNPVLVGAFLALLLLCLPSPGHGESYFGDSHCSLQAIQDVSTFHLSVEIKTGRRSGL
LLLAAGMEDYLFLELQNGKVQARMNMGAGEVTLSSSQGVQLNNLLDHKISLTLQDGKLTM
TIDELFPTYVPVDDDNEQLNIDMGIWLGGTGDLDAPYITNAIPPFRGCMTQVKFESHQFD
ILSKAFKQCHDTKESCSTEFEAGDGEATSFSTPDSFVSFPTWSGASGAPRVLEILMKTTI
EDALLVFHPGRESDFIAIGLVKGYLKGILDLGSGLEVLENTQVQMDDDQWHRVRVQVSRD
SFVMNVDSQSSSLPLDSSQTLDLVGSLYLGGIQGKMKPVFQESGSLSRVEEEMTAESFIG
CLGEIKVNQKDRSLQDALVTKDVHVKCEGEEYDYSSYYDTDATTSPPVRIRFVNMGTTNQ
HCYPTEDTPEMFRNVTNLLDVTPLLVPEGGEATLFIDNLNPTFDLSAVGMRQSQIIFTIQ
NDPWYGLLDINTNTKRTQKFTLLDVINEKIKYMHDGNERHTDQVQLLVVAESNGYLPECL
KTPQEYVLPVEILPVNDIPQLGGGEITVTENGRTRLSPALIKITDSDTRCDELIVTVTSE
PSMEVGYLENGQQPGRSISEFTCRELKDGNIYFIHRGGRAAGITLEVSDGQSVSHSTTFQ
LSATQPHMTIVTNTGLLLSQGSNASISSQSLAVVAHPRNGDIMYNITQPLIFGELQIKTR
EGMYKQVTTFSQFDLDEDHLSYVSTDSTDQEDIVTERIQFNVHLGQFSLWNHTFLVKIIP
AQVKVSTLVPLEMEAGEEQTIGLMELQAEVRGKNPDPQTIKYILVKPPTLGSLHLSDREL
NEGDIFTQKDILDNMISYGVHVQRSLDSTDQFQFRVHVDDQFSPLYTFPITILDNADAPV
MTIERLVVLQGGENTLNKNYLWTESPFSTDFMYHVTEGPRYGRLIRDSPLGQPRFEGAIR
VFSNEDLQSERLIYKHDGSKTSSDEFRFSATDQGAENADEGTVYGVFRISVQSKNEHAPV
RVVDKVFNIVRHGQRLLTTDVIQFKDDDSDFNDTQIVYAREGILSGNIVSTSNPSQPLFR
FTQADLRDTNILFIHHGADRERFSLQVSDGFHKTTALLEIQAGEPYLRVVNNTIIVIDHG
GTKTLNTTLLSADSNMDIRDDGEIKFRVTSPPADGRIIVSGIEAAEFTQEDLKKGVVSYE
HSYESLRSKDTFGFSVQARGHSEEGTFRIKIFKQGYLSEPEVITNEVIISYEGEHTVITQ
DYLKVDQADILSTEMVFTVKEPPRLGHVVKLTNGSDAAASPVLEYIHSFTQEDIDQGRIL
YVSASIQGDDAFTVDVSNGFTTVEDLRVSVNIVPRLIPVQTFNFTVKEGFSRPIDADIVN
ISHPFYTSANIDFVVEEAPQHGEIRYLDGDEVTYFTWEELKLGHVYYMHDSTESTEDSFT
LSASAYEIERRSLPVSISVTVTPVNDEPPKLTRNTGLEVLAGEEADITSSMLNTDDDDSP
AEELVYHVEAPTGGAVALKEAPEDAILNFTQAHINNGEVIFIHEGEESGGFSFTVTDGEH
TSPLYRFVVTARPLTITMVTQEELMVFPGTRQSITSANLGAVTNEDGNEINYSLIRPPRL
GRLILANDRNQYEEITGFSQTQLESGVVYYEHQIPEEPFWAVRDSVKLSLSSQPAPDVRH
ILPISVSYGAAHSGVSSQLWKNKGLEMVQGQRKVMDESVLDASNLLASLPEAERRDVDVV
FEIQRFPDHGRITLGGRDLPRNAPSFMQEDVTQGLLEYLHDDSGAPSDSFSFRARLKSEG
PALPPPAKALVLEEIFNISIKRRGSDSPELVTVDMLLEVLQGSMTLLTQKHLNTQDEDSP
PDEVHFKVTKAPGNGRLVDSLTMDPISGFSQEMINRGQVGFFSDGSLAEGFIEFVVSDGE
HQTEPHTLHVGILARTLFLDKAPEIKVKQGDDETLVTEEMLRATTGGPVEEDILYKITSV
PKYASVMVDRQPTSAFTQKQIKEGRVSVRFVKSTSPRDSVAFVASSRAANVSSVLNITVQ
PLANIAQDPLLPQGALVQLDRRLLDATPLANKTGSSPTFTVIQQPRGARFVRSGGPGAGQ
PVDTFSQKELDEGRVAMEILTPSGSQDSVSQDEARFLLKAHGVPPAECVLSFQTGPYNAS
VVYPATLLRIPSEVPSKDSNDLPGAGSPRSTSASPRWKGDMDRTHGDGPTTTSSDPRSNG
KPHVTRRSNFWSILIPILVILLLLLLAAILACYLIRKNKTGKHDVQTAACKPKNGEVASA
ETFRKTDPANNIPMSNMDAKDADPELLQHCRTTNPALKKNQYWV
NT seq
6975 nt
NT seq
+upstream
nt +downstream
nt
atgagagccacgaatccggtcctggtcggtgccttcctggccctgctgctgctctgcctg
cccagtccgggtcatggagaatcctacttcggggacagccactgcagtttacaagccatc
caagatgtctccaccttccacctgtcggtggagatcaagacgggtcggcggagcgggctg
ctgttactggctgcaggaatggaggactacctgttcctcgagctccaaaacgggaaagta
caggcacgaatgaacatgggggccggtgaggtgacgctgtcctcgtcccaaggagtgcag
ctgaacaacctcctggaccacaaaatctccctcacactgcaagacggcaaactcaccatg
acaatcgatgagctcttcccaacatatgttcccgtggatgacgacaacgaacagctcaat
atcgacatgggcatttggctcggaggaaccggagacctggacgccccctacattaccaac
gccattccccccttccgcggctgcatgactcaagtcaagtttgagtcccaccagtttgat
attctcagcaaggcgtttaaacaatgccacgacacaaaggaatcctgcagcaccgagttt
gaggccggtgacggggaggcaactagtttcagcacacctgattcctttgtgtccttcccg
acatggagcggggctagtggcgctccaagggtgttagaaatcctcatgaaaaccaccatt
gaggacgcgttacttgttttccaccctggccgagagtcagactttattgctattggtctt
gtgaaaggctatctcaaaggcattctggacctcggcagtggcttggaggtactggagaat
acccaggtgcagatggatgatgatcagtggcatagagttagggttcaagtcagtcgggac
tcttttgtcatgaatgtggacagccagtcttcctcccttcctcttgactcatcacaaaca
ttggacctggttggaagcttgtacctcggaggcatacaggggaaaatgaagcccgtcttt
caagagagcggttccttaagtcgcgtagaagaggaaatgacagcagagtccttcattggt
tgtttgggggaaatcaaagtgaatcagaaagatagaagcctgcaggacgccttggtgacc
aaagacgttcacgttaaatgtgaaggagaggaatacgactactcgagttactacgacacg
gacgcaacgacgtcgccacctgttcgcatccgatttgtgaatatgggcaccaccaaccag
cattgctacccgacagaggatacgccagagatgttccgaaacgtgacaaaccttcttgac
gtcacccctttgcttgtgcccgaaggtggggaagctacactttttatcgacaacctaaat
cctacgtttgacctcagtgctgtcggaatgcgtcaatcccagatcatcttcactatccag
aatgatccctggtacggcttacttgatattaacacgaatacgaaacgcactcaaaagttc
actcttcttgacgtcatcaatgagaagattaaatatatgcacgatgggaacgagaggcac
acagatcaagtccagctgcttgtggttgcggaaagtaacggctaccttccagaatgttta
aagactcctcaggagtacgtcctcccggttgaaattcttcccgtcaatgatataccgcaa
cttggtggaggagaaatcaccgtcacggaaaacggcagaactcgtttgagtcccgccctt
atcaaaatcacagattctgacacccgatgtgacgaattaatagtaactgtgacctcagag
ccttccatggaagtcggttacttggaaaatggtcagcagccaggaaggagcatttcagag
ttcacttgcagggaattaaaagatggaaatatctatttcatacaccgagggggtagagct
gctggaattactttggaggtgtctgatggacagtcagtaagccattcaactacatttcag
ttatctgcgacacagccacacatgactattgtcaccaacactggccttctcttgtctcaa
ggaagcaacgcttccatcagtagtcaaagtctggccgtcgtcgctcaccctcgtaatgga
gatattatgtataacatcacgcaacctttgatatttggagaactacaaataaagacgagg
gagggaatgtacaagcaggttacaactttcagtcaatttgatctggatgaagaccatctg
agttatgtcagcacagactcgactgaccaggaagatattgtgaccgagcggattcaattc
aacgtccacctgggacagttctccctctggaaccacaccttcttggtcaagatcatccct
gcacaagtgaaagtttctaccttggttcccttagagatggaggcgggtgaagagcaaaca
atcggactcatggagcttcaagccgaagtaagagggaaaaacccagatcctcaaactata
aaatacatccttgtcaagcctccgacactcggtagtctccatttgtcagacagagagttg
aatgagggggacatcttcacacagaaggacattttggacaatatgattagctatggtgtg
catgtgcaaagatctctggatagtacagaccagttccagttcagagtccatgttgatgat
cagttctcccctctatacacctttccaattaccatcctcgacaatgccgacgctcccgtt
atgaccattgagaggctggttgtcttgcagggtggtgaaaatactctgaacaagaactac
ctttggacagagtctccgttttctacagattttatgtaccacgtcacagaggggccaagg
tatgggcgactgatcagggactccccgctcgggcagccgagatttgagggggcgataaga
gtgttcagcaacgaagacctccagtctgaaaggctcatttacaagcacgacggctctaag
accagcagtgacgagttccgcttttcagcaacggaccaaggagcggaaaatgccgacgag
ggaactgtttatggagtgttcagaatatccgtccaatccaagaacgagcacgctcccgtg
agggtcgtggacaaagtcttcaacatagtccgccacggtcagcgtctgctaaccaccgac
gtcatccagtttaaagacgacgactccgatttcaacgacacccagatcgtctacgctcgc
gagggaatcctctcgggcaacatcgtctcgacgtcaaacccctcgcagcccctgttccgc
ttcacgcaagccgacctgcgagacacgaacatcctcttcattcaccacggggccgaccgg
gagcggttctccctgcaggtgtcggacggcttccacaagaccaccgcgctgctcgagata
caggcgggcgagccctacctccgagtggtgaacaacaccatcatcgtcatcgaccacgga
ggcaccaagaccctgaacaccaccctgctgagcgccgactccaacatggacatcagagac
gacggcgagatcaagttccgggtcacgtcgccgcccgccgacggcaggattatcgtgagc
ggcatcgaggcggcggagttcacccaggaggacctgaaaaagggcgtcgtctcgtacgag
cacagttatgaaagtctccgatccaaggacaccttcggcttcagcgtccaggcgagagga
cattctgaagaaggcacattcaggattaaaatattcaagcaaggttacctctcggagccc
gaggtgattaccaatgaggtcatcatttcctatgagggagagcacactgtaatcacccag
gattatctcaaggtggatcaagctgatattctttccacagaaatggtgttcaccgtcaag
gaaccccctcgcctcggccacgtggtcaagctgacgaacggctcggacgccgcggcctcg
cccgtcctcgaatacatccactccttcacccaggaggacatcgatcagggacgcattctc
tacgtgtcggcatccatccagggcgacgacgccttcacggtcgatgtcagcaatggtttc
accaccgtggaggacctgcgcgtctccgtgaacatcgtgccccggctcatccccgtccag
accttcaacttcacggtgaaggaaggtttcagccggccgatagacgccgacatcgtgaac
atctcgcatcccttctacacctcggcgaacatcgactttgtggtggaggaggcgccgcag
cacggcgagatccgctacctggacggagacgaagtgacttactttacatgggaggagctg
aaacttggacacgtctactacatgcacgacagcaccgagagcacggaggacagtttcacg
ctctccgcctcggcttacgagatcgagcgccgcagcctccccgtctccatctcggtgacc
gtcacgccggtcaacgacgagccgcccaaactgacgcgcaacaccggactggaggtcctc
gccggagaagaagcagatatcacgtccagcatgctgaacaccgacgacgacgactccccg
gcggaggagctggtttaccacgtcgaggcgccgaccggcggcgccgtggcgttgaaggag
gcgcccgaagacgccatcttgaatttcacccaggctcacatcaacaatggggaggtcatc
ttcatccacgagggcgaggagtccggcggcttcagcttcacggtgacggacggcgagcac
acgtcgcctctctaccggttcgtcgtcacggccaggcctctcaccatcaccatggtaacg
caggaggagctcatggtgtttccagggacgaggcagtccatcacgagtgccaatctgggg
gccgtgaccaatgaggatggcaatgagataaactactctctcatccgcccccctcgcttg
gggagactcatactggccaacgacaggaaccagtatgaggaaattactggcttctcacaa
acacagctggagtcgggcgtggtctactacgagcaccagatccccgaggagcccttctgg
gcggtgagggactccgtgaagctgtctctgtcctcccagccggcccccgatgtccgccac
atcctgcccatctccgtgtcttacggcgccgctcacagcggcgtctcctcgcagctgtgg
aagaacaaaggtttggaaatggtccaaggccagaggaaagtcatggatgagtccgtcctc
gatgcctccaatctcctggcgagcctcccggaagctgagcgtcgcgatgtggatgtggtt
tttgagatccagcgtttcccggaccacggtcgcatcaccctggggggccgggaccttccc
cgcaacgccccgtctttcatgcaagaagacgttacccaagggttgctggagtatctccac
gacgactcgggggctccctccgacagcttctctttcagagcccgtctaaagtccgagggt
ccggctctgcccccgcctgccaaagccctggtcctggaggagatatttaacatctcgatc
aaacgccgcggctccgactcccccgaactcgtcaccgtcgacatgctcttggaggttctt
cagggctccatgacccttttgactcagaagcacctgaacactcaagacgaggacagtccg
ccggacgaggtgcacttcaaagtgaccaaagcgcccggcaacggccgactggttgactcc
ctcacgatggaccccatctccgggttctcgcaggagatgatcaaccgcgggcaggtgggc
ttcttcagcgacggcagcctcgccgagggcttcatcgaattcgtcgtgtcggacggcgag
catcagacggagccgcacacgctccacgtcggcatcctcgctcgcaccttgtttctcgac
aaagctcccgagatcaaggtgaagcaaggcgacgacgagaccctggtgaccgaggagatg
ttgagagccaccaccgggggtccggttgaggaggacatcctttacaagattacaagcgtg
ccgaagtatgcatctgtcatggtggatcggcagccgacgtccgccttcactcagaaacag
atcaaagaaggccgggtcagcgtccgcttcgtcaagtccacttcgcctcgagacagcgtt
gccttcgtggccagtagcagggccgccaatgtctcctcggtcctcaacatcacggtccag
cctctggccaacatcgctcaggatcctctcttaccccaaggcgctcttgtccaattggac
aggaggcttctggatgcgactcccctggcaaacaaaaccggaagctcccccacgttcacc
gtcatccaacagccccgcggcgctcgcttcgtgaggtctggaggtcctggtgccggtcag
ccggtggacacattcagccagaaggagctggatgagggccgggttgccatggagatcctt
accccttctgggtcccaagatagtgtcagtcaggacgaggcccgcttcctgctcaaagcc
cacggggtccctccagcagaatgtgtgctgtccttccagacgggcccctacaatgcatcc
gtggtctaccctgccactctgttgaggattccctcagaagtcccatcgaaggacagtaat
gacctccccggcgccgggtcccctcgttccacttcagctagcccccgctggaagggcgac
atggaccggacccacggagacggccccacaacgacgtcttctgaccctcgctccaacggg
aaaccgcacgtgaccagacgcagcaacttctggtctattctcattccgatcctggtgatc
ctcctcctcctgctgctggcggccatcttggcctgctacctgatccgtaaaaacaagacg
ggcaagcacgacgtccagaccgcagcgtgcaagcctaaaaacggagaggtggccagcgcg
gaaacctttcgcaaaaccgacccggctaataacatccccatgtccaatatggacgccaaa
gacgcggacccggagttgttgcagcactgtcggacaacgaacccggccttgaaaaagaac
cagtactgggtctga
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integrated database retrieval system
