Pseudoliparis swirei (Mariana hadal snailfish): 130195068
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Entry
130195068 CDS
T09868
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130195068 (lingo1a)
Membrane trafficking [BR:
pswi04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
130195068 (lingo1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
LRR_1
Ig_3
ig
Ig_2
LRR_Zer-1
LRR_9
LRRNT
Ig_C17orf99
LRR_At5g56370
V-set
Motif
Other DBs
NCBI-GeneID:
130195068
NCBI-ProteinID:
XP_056272325
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Position
6:6175314..6203010
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AA seq
615 aa
AA seq
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MAAGEATGHSYLVACWQPILILLLGVVLSGSSTGCPSRCECNVQELSVLCHRKKLMTVPE
GIPAETKLLDLSKNRIRTINPDEFANFPNLEHLELSENIISTIEPGAFNNLYGLRTMGLR
SNKLKLIQLGVFTGLSNLTQLDISENKIVILLDYMFQDLYNLRSLEVGDNDLVFISHRAF
HGLSSLEHLSLEKCNLSSVPTEAFTHLHSLITLRLRLLNINVIRDYSFKRLYRLKVLEIA
NWPYLDTMTPNCLYGLNLTSLTIANANLTTIPYVALRHLVYLRFLNVSYNPIHTIEGNKL
HDLLRLREFHLVGGRLAMIEPYSFRGLNYLKILNVSGNSLSTLEESAFHSVGNLETLALY
DNPLACDCRLLWVFRRRWRLNFNRQQPTCASPEFVQGKEFKDFPDVLQPNYFTCRKSRIR
DRKPQQKFVDEGAIVHFACKADGDPAPLIMWLSPQKKFITSKTIGRLSVLPDGTLEVRYA
QIQDNGTYVCVASNAGGNDTSLAHLHIHSYSPDWPHQPNKTFAFISNQPAETGANGTRAN
APFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGTTKHNIEIEYVPRKSDAGMS
SSTVDAPRKFNMKMI
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggggaagcgactgggcacagctacctggtggcttgctggcagcccattctg
atcctgttgctgggcgtggtgctctctggctcctctacaggctgcccgtcccgctgcgag
tgcaatgtccaagagctgtccgtcctgtgccaccgcaagaagctcatgacggttcccgag
ggcattcctgcagaaaccaaactgctggacctcagcaagaaccgcatcagaaccatcaac
ccagacgagtttgccaactttcccaacttggagcacctggagctcagtgaaaacatcatc
tccaccattgaacccggagcgttcaacaacctttacggcttgcggacaatgggtctgcgt
agcaacaagctcaagctgatccagctcggcgtcttcactggcctgagcaacctcacgcag
ctggacataagtgagaacaagattgtcatcctgttggactacatgttccaggatttgtac
aacctgcgatctttagaggtgggcgataacgacctggttttcatctcccaccgggctttt
catggcctgagcagccttgagcacctgagtctcgagaagtgcaacttgtcctctgtgcca
acagaggcctttacccacctccacagtttgatcacgctcaggctccgcctcctcaatatt
aacgtcatacgggattattccttcaaaaggctctatcggctgaaagtgttggaaatagcc
aattggccatacctggatacgatgaccccaaattgcttatatggattaaatctcacctcc
ctgaccatcgcaaatgccaacctgaccacaattccttatgtagccttgcggcacttggtt
tatttgcgctttcttaatgtttcatacaaccctatccataccattgaagggaataagctc
cacgatcttttgcgcctgcgggaatttcatctggtcggaggaagactggcaatgattgag
ccctactctttccgtggtttaaactacctgaagattctcaatgtgtctggaaactccctg
agcactttagaggagtctgctttccattcagttggcaacctggaaacccttgccctgtac
gataatcccctggcctgtgactgccgactgttatgggttttccggcgacgctggaggctg
aacttcaacaggcagcagccgacctgtgcctccccggagttcgtccaaggcaaagagttc
aaagacttcccggatgtcctgcagccaaactacttcacttgccgcaagtctcggatcaga
gatcgcaaaccccagcagaaatttgttgacgagggagccattgtccatttcgcttgcaaa
gcagatggagatcccgccccgttgataatgtggctctccccccagaagaagttcatcacc
agcaagacaattggaaggctctccgtgttgccagatggcacccttgaggttcgctatgcc
cagattcaagacaatggcacatatgtgtgtgtggctagcaacgcgggaggaaacgacacc
tccctcgctcacctgcacattcatagctactcgcctgactggccacaccagcccaacaag
acctttgccttcatttcaaaccagcccgcggagaccggcgctaacggcacacgagccaac
gcccctttccccttcgatataaagacgttgatcatcgcgaccaccatgggcttcatctct
tttctcggcgtcgtcctgttctgcctggtgctgctcttcctctggagcagaggcaaaggc
accaccaagcacaacatcgagatcgagtacgtgccacggaaatcggacgctggcatgagc
agcagcacggtggatgctcctcgcaagtttaacatgaaaatgatttaa
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