Pseudoliparis swirei (Mariana hadal snailfish): 130195115
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Entry
130195115 CDS
T09868
Symbol
rfwd3
Name
(RefSeq) E3 ubiquitin-protein ligase RFWD3
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130195115 (rfwd3)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130195115 (rfwd3)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130195115 (rfwd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
Beta-prop_WDR5
Beta-prop_THOC3
zf-RING_2
WD40_CDC20-Fz
zf-C3HC4
WD40
zf-RING_UBOX
WDR55
EIF3I
Beta-prop_WDR3_1st
zf-C3HC4_2
zf-rbx1
Beta-prop_WDR3_2nd
Beta-prop_EML_2
zf-RING_5
zf-ANAPC11
zf-C3HC4_3
WD40_WDHD1_1st
WD40_Prp19
Rtf2
zf-RING_11
CFAP43_N
Beta-prop_WDR75_1st
zf-RING_Vps41
Beta-prop_RIG_2nd
zf-C3HC4_4
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
NSRP1_N
NBCH_WD40
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
130195115
NCBI-ProteinID:
XP_056272383
LinkDB
All DBs
Position
6:2247950..2260626
Genome browser
AA seq
707 aa
AA seq
DB search
MEAMEVDLPGVLPGAGGGGTRRSRRRAINMAAGLAGSAAAPQDVSDSSDTEVDEDGEGEW
TAPPARLPFTWAFSQRAARAPSAAQGAWLRRRLRQGLRVHYSSQTAAPSRGFQEFLLRAP
VAGAAEPESGNTTEVSQSEDDEEEGPAAIAPGPGDPAPPAGPRLASQPQEADSNQDSGPS
ADGERTDAPSQNVQPAPVAPPPEAPPPLQQSEEGEGDICSICFEAWTTAGEHRLSALRCG
HLFGFTCIRRWLSAQGPSAKCPQCNKKAKRSDIVLLYAPKLRALDNCEQEILKKSLYQEQ
SLRRKAELESAQFKLKLQVVTNKYGHAQQELQELRALMSRGSQGSLSSSASGSLPFGPGA
RRRPPGSRGPQYVFSKAVLVSQAGGSRVLAYCEPLSCLLASQPSPQATLVPGCGVKKVSV
VNMKASQYVPIHSKQIRGLCFNRQNDSLLLSAALDNTIKLTSLLTNTVVQTYSTSKPVWS
CCWCLDNSNYVYAGLSNGSVLVFDTRNTSTHVQELEALRSRCPVASQLARGSSSSRGGLI
SSSLEGGCFWEQVNENTYRPHAMPLEGAGCTGIQVETESRHCLVTYRPGRSNPSLRCVLM
ALTRTPQQDSAHLPSCSCSPVQTFSAGSSCKLLTKNAVFSRPGGGGTLVCAGDEASSSTM
VWDASSGALLQKLPADLPVLDISPFSLNGDHFLASLTEKMLKLYRWE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggaggccatggaggtggacctccccggggtgctgccgggtgccggaggaggcgggacc
agacgcagcagacggcgcgccatcaacatggcggctggcttggcgggatcggccgccgcg
ccgcaggacgtctctgactccagcgacacggaggtggacgaggacggcgagggggagtgg
acggcgccgcccgccagacttcccttcacctgggccttcagccagagggcggcgcgcgcg
ccctcggccgctcagggggcgtggctacggaggagactcaggcagggcctcagggtgcac
tactccagccagacggcagcgccctcaagaggcttccaagagttcctgttgcgggcgccg
gtcgccggcgcggccgagccggagtccggcaacaccaccgaggtcagccagtccgaggat
gacgaggaagaaggcccggccgccatcgctccggggcccggcgacccggcgccgcccgcc
ggtcctcgcctcgcctcgcaaccacaggaagccgactcgaatcaggactccggtccatct
gcagacggagagaggacagacgctccgagtcagaacgtccagccggcgcccgtggctccg
ccccccgaagccccgccccccctgcagcagtcggaagagggcgaaggtgacatctgctcc
atctgcttcgaggcgtggacgacggcgggcgagcaccggctgtccgccctgcgctgcggt
cacctgttcggcttcacctgcatccggcgctggctgagcgcccagggcccgtccgccaag
tgtccgcagtgcaacaagaaggcgaagcgctccgacatcgtcctgctctacgctcccaag
ctgagagcgctcgacaactgtgagcaggagatcctcaagaagtctctgtaccaggagcag
tctctgaggaggaaggctgaactcgagtcggctcagttcaaactgaagcttcaagtcgtc
accaacaaatacggacacgcacaacaagagctgcaggagctgagggctctgatgtcccgt
ggcagccagggctctctctcctcctcggcgtcgggctcgctccccttcggcccgggagcc
cggcgccgcccgccgggctcccgggggccccagtacgtgttctccaaggcggtgctggtg
tcgcaggccgggggctcccgggtgctggcctactgcgagccgctcagctgcctgctggcc
tcgcagccgtcgcctcaggccacgctggtccccggttgcggcgtgaagaaggtgagcgtg
gtcaacatgaaggccagtcagtacgtccccatccacagcaaacagatccgaggtctgtgc
ttcaaccggcagaacgacagcctgctgctgtcggcggcgctggacaacaccatcaaactc
accagcctcctcaccaacaccgtggtccagacctactccacctctaagcccgtgtggagc
tgctgttggtgtttggacaacagcaactacgtctacgccggcctgagcaacggctcggtg
ctggtgttcgacaccagaaacaccagcacacacgtgcaggagctggaggcgctgcgctca
cggtgtcccgtggcgtcccagctcgctcgtggctccagcagctcgcgcggcgggctgatc
tccagctcgctggagggcggctgcttctgggagcaggtgaacgaaaacacgtaccggccg
cacgccatgccgctggagggcgccggctgcaccggcatccaggtggagacggagagccgc
cactgcctggtcacctacaggccaggccgctccaacccgtccctgcgctgcgtcctgatg
gcgctgacccgcacgccgcagcaggactccgcccacctgcccagctgctcctgctcgccg
gtccagacgttctccgccggctcgtcctgcaaactgctcaccaagaacgccgtgttcagc
aggccgggcggggggggcaccctggtgtgtgccggggacgaggcctccagctccaccatg
gtgtgggatgcctccagtggggctctcctccagaagctcccggctgacctcccggtgttg
gacatctctccgttctctctgaacggtgatcacttcctggcctccctgaccgagaagatg
ctgaagctctacaggtgggagtga
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