Pseudoliparis swirei (Mariana hadal snailfish): 130195230
Help
Entry
130195230 CDS
T09868
Symbol
arhgef1a
Name
(RefSeq) rho guanine nucleotide exchange factor 1a isoform X1
KO
K12791
Rho guanine nucleotide exchange factor 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
130195230 (arhgef1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130195230 (arhgef1a)
Membrane trafficking [BR:
pswi04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
130195230 (arhgef1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_16
RhoGEF
C1_1
PH
SOS1_NGEF_PH
C1_2
Prok-RING_1
PH_13
PhaC_N
BRISC_FAM175B_helical
PHD
PHDvar_NSD
zf-RING-like
STX6_10_61_N
Motif
Other DBs
NCBI-GeneID:
130195230
NCBI-ProteinID:
XP_056272623
LinkDB
All DBs
Position
1:complement(676548..708456)
Genome browser
AA seq
913 aa
AA seq
DB search
MSRVANLSKLRQERMRDINLRNKERERMREREKAAREREAHYSNGHLFTSLTVSATTLCS
ACNKSITAKEALSCPTCNVTIHNRCRDTLPNCTKMKQRQQKMAQVRNNSAVHNVTLRTKT
PGMRERPSSATYPSDSFRQTLLGSRRGRSNLSLSKSVSTNNIAGNLTDNSPLGLRRILSQ
STDSLSFRTRAMSVESLNDDGEFYYNALLEDLELESQDFKADSWSMAVESSYLQTHRKNV
IKRQDVIYELIQTELHHMRTLHIMERVFRQGMLEELQLDLCTVYAMFPCLDQLTRIHSHF
LEKLLLRRNSSLQSGSSRNFTIHQLGDMLLEQFSGQCADEMRKTYAEFCSRHLKAVKLYK
ELLARDKKFQCFIRRLSRGPLLRCHGVQECILLVTQRISKYPVLVQRILDNTSDDDEEEA
SSLAQALSMVRELLSSIDQQMEDLERAQRLQEIQTKLDPRAEAKVRYGGLFKPGELYRRR
LVHDGTLFWKTPGSRLKDTQVLLMTDILVFLQEKDQRYIFPCVDKSPILSLQNLIVRDIA
NQERGMFLISDSSPPEMYEFHAASKEDKNIWIRHIQSTVSKCPSREEFPLIETEHKAHLR
RLKAELHQKDREMLELLQERVTLFCELVEVTSGQEALQPAITRYLFRADTPQAPRAEKLL
LDATAEVDRLSELLLGSRVDIPLPSHHNHMEAVEPSESLRLPQAASLSITVATCDQDLLI
NGARDVLTSKDFMRSHEKSLPSQIYQRLVNVSVYLHALQGAVIKQDSILELLLLQPQDKG
AAWRPLWQREANAGSSLGELVLLQRQHSLLQEELLRLRDAESRFKDSERARAKLERHLKV
SQQLAEPAAHPAALQPGREARTGADPLWASQEPAHQSDGLQDSSDLEVDMTSDDDDGTAS
ESSKDLQDIPEEI
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtccagagttgccaatctgtcgaagctgcgccaagagaggatgagggacatcaacctg
cggaataaagagagagagcgcatgagggagcgagagaaggcggcgagggagagggaggcc
cattatagcaatggtcatctgttcacgtcattgacggtttcagccaccacgctctgctca
gcatgcaacaagagcatcacggccaaggaggcgctcagctgccccacttgtaatgtcact
atccacaaccgctgtcgagacactttgccaaactgcaccaaaatgaaacagaggcagcag
aagatggcccaagtaaggaataactcagccgtacataatgtcacgctgcgtacgaaaact
ccaggaatgcgcgagcgtcccagttcagccacttacccgtctgacagcttccggcagaca
ctgttgggatcccgccgcggacgctcaaacctttccctgtccaagagcgtctccaccaac
aacattgcagggaacctgactgacaactcccccctcgggctgcgtcggatcctttcccag
tcgacagactcgctcagcttcaggaccagagctatgtcagtggagtctctcaatgatgac
ggagaattctactacaatgcactgctggaggatctggagctggagagccaggactttaag
gctgactcatggagcatggcggtggagagcagctacctgcagacacaccgcaaaaacgtc
atcaagaggcaggatgtcatctatgagctgattcagacagagctgcaccacatgcgaacg
ctgcatataatggagagggtgttccggcaaggcatgctggaggagcttcagctggacctg
tgcaccgtgtatgccatgttcccctgcctggaccagctgaccaggatacactcccatttc
ctggaaaagcttctcctgcggcgcaacagcagtctgcagtccgggtccagccgcaacttc
accattcaccagctgggggacatgctactggagcagttctcaggccagtgtgcagacgag
atgcgaaagacctacgctgagttctgcagccgccacttgaaggctgtcaaattgtacaag
gaactgctggccagagacaagaagttccagtgcttcatacggcggttgagtcgcggaccc
ctgctacgttgccatggtgttcaggagtgcatcttgttggtgactcagcgaatctccaaa
tatcctgtccttgttcagcgcattttggacaataccagcgatgatgatgaagaagaagcc
tcctctttggcccaggctctctccatggtcagagaacttcttagttcaatagaccaacag
atggaagacctggagagagcacagcgtctgcaagagatccagaccaaactggacccccgg
gctgaggccaaggtgagatatggtggcctgttcaagcctggagagctgtaccgccggaga
ctggtccatgatgggaccctcttctggaaaaccccaggatcccgactcaaagatacacag
gtcttattgatgacagacatcctggtgtttctgcaggagaaagaccagagatacatcttt
ccatgtgtggacaagtccccaatactttcccttcagaacctgatcgtgagggatatagcc
aatcaggaacgaggcatgttcctcatcagtgactcctctcctccggagatgtatgagttc
catgctgcctccaaggaggacaagaacatctggatacgccacatccagagcaccgtcagc
aagtgcccttcacgcgaggagttccccctcatagagactgagcacaaggcccatcttagg
agactcaaagcggagctccaccagaaggaccgtgagatgctggagctcctgcaggagcgg
gtcactctgttctgtgagctggtggaagtgaccagcgggcaggaggcgctgcagccggcc
atcacgcgctacctgttcagggccgacacgcctcaggccccccgagcagagaagctgctc
ctggacgccacagcggaggttgacaggttgagtgagctcctcctcggctccagagtggac
atccctctaccgagccatcacaaccacatggaggcggtagaacccagtgagtcactgaga
ctcccacaggcagcgtcactcagcatcaccgtggcaacatgtgatcaggatctgttgatc
aatggagcccgtgatgtgttgacatcgaaggatttcatgaggagtcacgagaagtcactg
ccttcacagatctatcagcggctggtgaacgtcagtgtttacctccacgccctccagggc
gctgtcatcaaacaagactccatcctggagctgctgctgctgcagcctcaggacaaagga
gccgcgtggcgccccctgtggcagcgggaggccaatgcagggtcgagcctcggggagctg
gttctcctgcagagacagcacagcctgctgcaggaggagctgctgaggctcagggacgcc
gagagcaggttcaaggacagcgagagggcccgggccaagctggagaggcacctgaaggta
tcgcagcagctcgcggagccggccgctcaccctgctgctctgcaaccaggaagggaggcc
cgtaccggagcggaccccctgtgggccagccaggagccggcccaccaatcagacggcctc
caggacagcagtgatttggaggtagacatgacgtcagatgatgacgatgggacggcgtct
gaaagctccaaggaccttcaagatattcccgaggagatctga
DBGET
integrated database retrieval system
