Pseudoliparis swirei (Mariana hadal snailfish): 130195250
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Entry
130195250 CDS
T09868
Symbol
nedd1
Name
(RefSeq) protein NEDD1 isoform X1
KO
K16547
protein NEDD1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130195250 (nedd1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pswi04812
]
130195250 (nedd1)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Other PCM proteins
130195250 (nedd1)
Microtubules and associated factors
gamma-tubulin ring complex
130195250 (nedd1)
Cytoskeleton proteins [BR:
pswi04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Gamma-tubulin complex components
130195250 (nedd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40
WDR55
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
ANAPC4_WD40
Beta-prop_WDR19_1st
EIF3I
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_LRRK2
KNTC1_N
VPS8_N
Motif
Other DBs
NCBI-GeneID:
130195250
NCBI-ProteinID:
XP_056272653
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All DBs
Position
6:complement(3153493..3164939)
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AA seq
648 aa
AA seq
DB search
MEEETRLVSTGDCVRIWSCGSMAPLEQFNPHSSSHPVAQACWSSNNQYLVSASSSGDKLV
VSSLKSSVVTVVELGDGKKQTRVCLSSSSQFLASGGLDHGVHIWDLKTKRLHRSLKDHKE
EVTCVSFNANDSYVASGSTSGDLVLHSLTTNLSSKAFGHGSNQPVQDLRLSPLRRSLLGS
VSSSGTVVLWDSNTQKELQVFDDAHKAPGSALAFSPASELLLVSVGLDKKIVCYDTASRI
VLRSIRVDSPLSSVDFLPDGTGLVVGSTQGKIYQYDLRNSSSPTRVTLAHKTSVTCLRFQ
SSTSRHKSSKLGSTKIVKRSSIKLSSNQSDPAPDTGPAPGTGPAPLRQVTGTAGGAGPEL
MSQGTEPLPVEEKFSSVGRNSLDVFSPAREDSQSEESTFGKTHGIGLETQSREGEGQKVI
GRASLDIFSPVREDLNPRKTPLGTLLGGAAARCYSPLSVIQTPTSITEEEPITAAAAQPC
DPRKASNSSLEGEGQATPTALQQTNHSQSAPTFFTPEPSLRTANGIQAHLSYESPVQRAA
SSTAGAALSAAVSSSLSQNIAEVVGQAGAAPLTSLQIHFIQNMIHETLEDFRDTCHRDIV
NLQVEMVRQFYIQLNEIHGLIEKYSVNESLVEEVERLKEENRRLKTNY
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggagacccgcctggtgtccacaggagactgtgtgaggatctggtcctgtggc
tccatggctccgctggagcagttcaaccctcacagcagcagccacccggtggctcaggcc
tgctggagctccaacaaccagtacctggtcagcgccagcagcagcggagacaagctggtg
gtctccagcctcaagtcctctgtggtcacagtggtggagctgggagacgggaaaaaacag
acccgtgtgtgtctgagttcctcgtctcagttcctggccagcggaggtctggatcacggg
gtccacatctgggacctgaagaccaagagactgcaccgctccctcaaggaccacaaagag
gaggtgacctgcgtctccttcaacgccaacgacagctacgtggcctccgggtccaccagt
ggagacctggtcctccacagcctgaccaccaacctgtccagcaaggccttcgggcacggc
agcaaccagccggtccaggacttgaggctgtcccccctgaggcggtccctgctgggcagc
gtgtcctccagtggcacggtggtcctgtgggactccaacacccagaaggagctgcaggtg
ttcgacgacgcccacaaggcgcccggctccgccctcgccttctcgcccgccagcgagctg
ctgctggtcagcgtgggattggacaagaagatcgtgtgttacgacacggccagccgcatt
gtcctccggtccatccgagtggacagccctctctcctcggtggacttcctccccgatggg
accggtctggtggtgggatcgactcaggggaagatctaccagtacgacctgaggaactcc
agcagccccaccagagtcacgctggcccacaagacctctgtcacctgcctccgcttccag
agcagcaccagcagacacaagtccagtaaactcggctccaccaagattgtcaagagatct
tcaatcaagctgtcaagcaaccaatcggaccccgcccccgacacaggccccgcccccggc
acaggccccgcccccctccgacaggtgacaggcacagcagggggcgctggtccagagctg
atgtctcaggggacggagccgcttcctgtggaggagaagttcagcagcgttggacggaac
agtctggatgtcttctctcctgctcgggaagactctcagtccgaggagtcgacctttggc
aagacgcacggtatcggtttggagacgcagtccagagaaggggagggtcagaaggtcatc
ggccgggccagtctggacatcttctcccccgtcagagaagatctgaacccccgtaagacc
cccctggggacgctgctgggcggcgccgcagcccgctgctacagcccgctgtccgttatc
cagacccccacctcaatcacagaggaggagccaatcacagccgcagcagcccaaccatgt
gaccccaggaaggccagcaactccagtctggagggggagggccaggccacgcccacagca
cttcaacagaccaatcacagccagtcggccccaaccttcttcactccagagcccagcctc
aggacagccaatgggattcaagctcatctgagctacgagtctcctgtccagagagctgcc
agtagcacagcaggtgcagctctgtcggcggccgtgtcctcatctctctcccagaacatc
gctgaggtggtgggtcaggcaggagctgctcctctcacgtccctgcagatccacttcatc
cagaacatgatccacgagactctggaggacttcagggacacctgtcacagggacatcgtc
aacctgcaggtcgagatggtccgacagttttacatccagctgaatgaaatccacggcctg
atcgagaagtactccgtgaacgagtctctggtggaggaggtggagcggctgaaggaggag
aaccggcggctcaagaccaactactga
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