Pseudoliparis swirei (Mariana hadal snailfish): 130195251
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Entry
130195251 CDS
T09868
Symbol
si:ch211-59o9.10
Name
(RefSeq) homeobox protein OTX1
KO
K19041
E3 ubiquitin-protein ligase RNF38/44 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130195251 (si:ch211-59o9.10)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130195251 (si:ch211-59o9.10)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130195251 (si:ch211-59o9.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
RINGv
FANCL_C
Motif
Other DBs
NCBI-GeneID:
130195251
NCBI-ProteinID:
XP_056272656
LinkDB
All DBs
Position
6:complement(3166640..3172225)
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AA seq
411 aa
AA seq
DB search
MQDPRAASPGSSEPDSPGGLNRGCLLDPEDVLYHDLSVMVPETPSPLLGKRRRGGLIPEE
ALGPLSSVGSPKRPDSSHKSKRRRLLAAPSEQSAAFIPASSLRAFPLGGWFGAPLSTTSC
SSSSSSSSSSSSCLTPISEEEVEAAGSAVEDRRALLRRRTTSPSASESLSFLTEEERRWL
TGEQGGTSSAPEEIVISDDEEAVVRSAQEEEDATMARSLQAQFDHEESHSRHHHHLHHQH
YHHLLHQQSHHMFPPYMEPSWMPHLLAAVSPLVHFDNDLIGRNRRRGRVRRRNAEPELSE
DLQGNDYEALLAFEDRQGSVVSRKLTRREIQRFPTKTFQSESNSGNTQCQICFCDYTDGE
KLRMLPCFHDYHVQCIDRWLKENPTCPICRANLADPAPSDPAPSGPAPSDL
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacccgcgagcagccagtcccggttcctctgagccggacagtcccggaggtctg
aaccggggctgcctgctggacccggaggacgtcctctaccacgatctgtccgtcatggtc
ccagagacccccagtcctctcctcggcaagcggcggcgaggcggcctcatcccggaggag
gcgctcggccccctctcctccgtcggctctccgaagcgtccggactcctcccacaaatcc
aaacgtcggcgcctgttggcggcgccgagcgagcagagcgccgcctttattcccgcttcg
tctctgcgggcgtttcctctgggcggctggttcggggcgccgctgtcgaccacgtcctgc
tcctcctcctcctcctcctcgtcctcgtcctcctcctgcctcacgcccatatcggaggag
gaggtggaggcggcgggttccgctgtagaagaccggcgagctctcctccgccgcaggacg
acttcgccgtccgcctccgagtcgctgtccttcctcactgaggaggagaggaggtggctg
accggagagcagggaggcacctcctcagctccagaggagatcgtcatcagtgacgatgag
gaggctgtggttcgctctgctcaggaggaggaagatgcaacgatggctcgaagtcttcag
gcccagtttgaccacgaggagtctcacagcagacaccaccatcatcttcatcaccagcat
taccaccaccttcttcatcagcaaagccaccacatgttcccgccctacatggagcccagc
tggatgcctcacctcctggctgccgtctctcctctggtccactttgacaacgatctgatt
ggtcgaaacagaagacgtgggcgtgtcaggaggaggaacgctgagccggagctttcagaa
gatcttcaggggaacgactacgaggctctgctggctttcgaggaccgccagggctccgtg
gtgtccaggaagttgacccgcagggagatccagaggtttcccaccaaaaccttccagtcg
gagagcaacagcgggaacacgcagtgtcagatctgtttctgtgactacaccgacggggag
aagctgaggatgctgccctgtttccatgactaccacgtccagtgcatcgaccgctggctg
aaggagaaccccacctgtcccatctgcagagccaacctggctgaccccgccccctctgac
cccgccccctctggccccgccccctctgacctctga
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