Pseudoliparis swirei (Mariana hadal snailfish): 130195258
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Entry
130195258 CDS
T09868
Symbol
spg11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130195258 (spg11)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
130195258 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Regulator_TrmB
Motif
Other DBs
NCBI-GeneID:
130195258
NCBI-ProteinID:
XP_056272671
LinkDB
All DBs
Position
6:complement(2885671..2919651)
Genome browser
AA seq
2332 aa
AA seq
DB search
MMLEERSSLEVCVIPENRHCGGVTDIRRAALAPGGSLLGCLGLRGRLVVWNPADREAPPA
AVDGCYADFSWEEEEEGGGASSSSSSLLAVGTQGEVTLLRVEAEPSSSIRVLRVSGCPAE
RLLQTVREQDPDVRELQSVHVLSFAAGRGRVLLNRDWLLQLRWRQTGEEPQPQEEEPQPE
EEEELQTVSCCSIRQSDDSSRSSVHHCVCSDFLFVLSATGLIAVHHVSDGRLQASIDLPA
YLTFLQLEDNLVSSSPSSSLCPPSSSPSPSFASSSSFCLLQVTPDLSTVVAVTQSHTAVA
IDLDRYFSLYPDHLLCAAAPLRPPIQNPLRFQTPTDQDGLSSAVCSLSGLGAPFSADRSW
ETRLASMYSRAQKSAAPSSSSSSSSSSSWSSSLHPPRPPRAGSSAHSRVPRGVATVTFSA
PKHSAPSLLAVSEFSAQLTFASPGNRRTTVALWDFESGSVSHHEAQGEAAPVQHWRERQH
RLLLKDSGLFQVLFSVTQQELLSRLMLFGSAATVDAVCHLNSWGRCSIPVHALQAGLKNR
QLDTVDFYLKSKEKLLVPEAEEPEASRRSLSHRFQDLSPALDLLCSAVRDSHSEAQSRQF
SEQLLNVTTSFINTQVRSVLSNTQLEDEGVRGCVDALDLYVTELRSYMKKFPWPAGGDAT
DSADRIQKEKEEEEEEEAQRDEWEQLPTEEVVRQSVLTNQIPRAQAVLRRRSRPEQRLSA
LRMEGLRQVFCCLQDRDLQTASTLLVNMGFSVKEQLHSVCLHTDDKNLRQFVVEELSGRS
HFPGEELQSVAFIREMERLGSLPAARRHAEATPLRPVQVQMVPREPGGGDAVLEELLGQR
RSAVEEQEQKAGLWRNLRLDWVRNWDPSCQTAVLLSRRHHTEVTSCDPAVLWRYLTALHD
QRRVVDWIQDQQTPGGSRWPELTPELVDDNTACSTYMREQILDLLARRGLFVPEELADLD
QLLWRLAQGGGVMAPAPQVPQYRSPLGLDLHSLFISFCVDRGLQYLLYTYLEHHRLTPRN
CPLLTNQSLSESRPWFDMLVKIQEITRDLSDPGLVFQASLTSAQVLLPGNQASLSSLLLE
GHSLLALAAIMFAPGGINQVVVQGERPGRAEGTVDPQLLKMALAPHPKLRAALFPSGPRG
TGPSSDVSVYHLLQSLHPLDPTRLFGWQAANTLNSTETSELPHFSSPHLVGRFALVENLD
FLYYLRHGRPSFAFATFLVQQLSVCSDVPLLLQQVWQQTYSLALQSFNVPSVTSASVCFC
ELLGVSSLKLRVDVRASNAIMQHWSQDNTRTLHTLVSKAEKLAEAEPGAAEELIGYLEAA
VTDSLEQKGIGRSSYEAAQEWALPVQFCQLHRLQLSSVFPARCAEDGQFIHFLLFVQLHS
FPPPQVRSLAARFGPTLRAHLSLAFQDLQASGPRGRRPVSPTGTPEHPRELFQVLLQSQE
EAEPCRYLLQEALVQRCPTLAVMAACQQGEELLPGLCVWLLTSVDAAASGEAAAHLADAP
QHHEWTLHDLSVIWRTLLGRGHVRPLLRGFELFQRDCPLVLVLRMFELCCDFRKFSEAKE
KLLDFQRTLITLRNGGAAPPGGLPLQWVESQASVLLLAMLRRASSPYDRHRLLQLLAGVD
KLLKSNGPDFRKLSQLSQLLQGSEVSLSPRLLECSSPSVQQEEFQAAVDALQAGGRYGQA
RRVALLAGLPVQRLLLSQLHQEATSQRSKRQWRRLETRVGLWRRCHERLRAEGADPESAS
RFFLSQAEPPEAGSDLLAVQERCLLLCLAARWLSLLRPPPAARLRRLEEELWAGRARRHV
LAAAVEEQSVFSPPPPGATPETDPYAALMKEFSFSDVSGLNTDSCLRLEGLPGPGEDREE
PGTAPPLSPEERSALAALVGQLLEEGSVHEASRVCRYFSLYHRDVWLVLRCRGVASGELE
PEPLEEEEGLPRKSMTSSPSMSSLLSFVMLPLPEDEVAGLLQKLVDQCRHGKNYCRQVLG
LYQLSKELQCSFLQMCREEPRSALEKLLLSEQPERFRKARAFVRAQGLGADAVAQLVAGA
VVRALLAGSAHELQPERQVFRPSEGRDSLVQLVKLCDDPNLVGVKLLEHLNGVHLRDLSC
IVELLVVAHDCFSLTCNMEGIVRVLQAARHLSHAYLAPGEHYGLLVRLLTGVGRYNEMTY
VFDLLHQNHRFEMLLRKKMDIDRGQTSSLKTALLDYLRRCLPADSEKHNMVALCFSMRRE
IGENHEMAARTQLKIIESQPWVVTPDLKSSLVKVLGLLRDAAESYSKDSCVRQATRCVSS
AKLVCLQLHFLNSGSELRVVHLRAAELLEAVTALPRCYQVHPIILPSTRYIP
NT seq
6999 nt
NT seq
+upstream
nt +downstream
nt
atgatgctggaggagaggagctcactagaggtgtgcgtgatcccggagaaccggcactgt
ggcggggtgacggacatccggagagccgcgctggctcccggaggctctctgctcggctgt
ctgggactccgcggccgcctggtggtctggaacccggcggacagagaggcgcctccggcc
gcagtagacggctgttacgccgacttctcctgggaggaggaggaggaagggggcggagcc
agcagtagctcctcctccctgctggctgttggcactcagggggaggtgacgctgctgcgg
gtggaggcggagccatcgtcctccatcagggtcctccgggtctccgggtgtcctgcagag
cgcctgctgcagacagtcagagagcaggaccccgatgtgcgtgagcttcagtccgtgcac
gtgttgtcgtttgccgccggtcgcggccgcgtgctgctgaaccgtgattggctgctgcag
ctgcggtggcggcagacgggggaggagccacagcctcaggaggaggagccacagcctgag
gaggaggaggagctgcagactgtttcctgctgcagcatccggcagagcgatgacagcagc
cgctcctccgtccaccattgtgtctgtagtgacttcctgtttgtcctcagcgccacggga
ctcatcgctgtgcatcatgtctctgatggccgtctgcaggccagcatcgacctgccggct
tacctcacgttcctccagcttgaggacaaccttgtctcctcctccccctcctcctccctc
tgccccccctcctcctccccctccccctccttcgcctcctcctcctccttctgcctcctc
caggtgacccctgaccttagcacagtcgtggccgtcactcagtctcacaccgccgttgcc
atcgacctcgaccgctacttcagtctgtatccagaccacctgctgtgtgccgcggccccc
ctccggccccccatccagaaccccctccggttccagacccccacagaccaggacggcctg
tccagcgccgtctgcagtctctccggcctcggggcacccttcagcgccgaccgctcctgg
gaaactcgtctggcctccatgtacagcagagctcagaagtctgcagctccctcctcctcc
tcctcctcctcctcttcctcctcctggtcctcctcgctccaccccccaaggccccccagg
gccgggtcctcagcccacagcagggtccctcgtggcgtggcgaccgtgaccttctccgcc
ccgaagcattccgccccgtctctgctcgccgtgtccgagttctccgcccagctgaccttc
gcctcccctgggaaccgacggaccaccgttgcattgtgggactttgagtctgggagcgtg
agccaccacgaggcgcagggcgaggccgctccggtccagcactggagagagaggcagcac
cgactgctgttgaaggactccggactcttccaggtcctgttctccgtgacccagcaggag
ctgctcagcaggctgatgttgttcggcagcgcggcgacggtggacgccgtctgccacctg
aacagctgggggcgctgctccatccccgtccatgcactgcaggcgggtctgaagaaccgt
cagctggacacggtggacttctacctgaagagcaaagagaagctgctggtccctgaagcc
gaggagccggaggcctccaggcggagcctgagccaccgcttccaggacctctctcctgcg
ttggacctcctctgttcggccgtcagagactctcacagtgaagctcagagtcgtcagttc
tctgaacagctgctgaacgtcaccacgagcttcatcaacacacaggtccgctcggtcctg
tccaacacccagctggaggacgagggtgtgcgcggctgcgtcgacgctctggacctctac
gtcaccgagctgaggagctacatgaagaagttcccctggccagcagggggcgacgccacc
gactcagctgaccgtattcagaaggagaaagaggaggaggaggaggaggaggctcagaga
gacgaatgggagcagctgccgacagaggaagtggtccgtcagtctgtcctgaccaatcag
atcccgagggctcaggccgtcctgaggaggcggagccggccggagcagcgcctgtcggct
ctgaggatggagggtctgcgtcaggtgttctgctgcctgcaggaccgagacctgcagacc
gccagcacgctgctcgtcaacatgggcttcagcgtgaaggagcagctccacagcgtctgt
ctccacaccgacgacaagaacctgcggcagttcgtggtggaggagctgtcggggcggagt
catttcccgggcgaggagctgcagagcgtggcgttcatcagggagatggagaggctgggg
tccctgcctgcagcccgtcgccacgcagaggccacgcctctcaggccagtccaggtccag
atggtccccagggagccgggtggaggcgatgcggttctggaggagctgctgggtcagagg
aggtctgcggtggaggagcaggagcagaaagccgggctctggaggaacctccgactggac
tgggtgaggaactgggacccgagctgccagaccgccgtcctgctgtccagacggcatcac
acagaggtgacttcctgcgacccagccgtgttgtggcgttacctgacggctctgcacgac
cagcgccgggtggtggactggatccaggaccagcagacccccggggggtcccggtggccc
gagctgaccccggagctggtggacgacaacacggcctgcagcacctacatgagggagcag
atcctggacctgctggccaggaggggcctcttcgtcccggaggagctggcggacctggat
cagctgctgtggaggctggctcagggtgggggggtgatggccccggccccccaggtccct
cagtaccggtcccctctgggcctggacctccacagcctcttcatctccttctgtgtggac
cgcggcctgcagtacctgctctacacctacctggagcaccacaggttgacgcccaggaac
tgtcccctgttgaccaatcagagcctgtctgagagccggccctggtttgacatgctggtg
aagatccaggagatcaccagagacctgtcagatccaggtctggtcttccaggccagttta
accagtgctcaggtgctgttgccaggcaaccaggcgtctctgagcagcctgctgctggag
ggccacagcctgttggccctggcggccatcatgttcgcccccggagggatcaaccaggtg
gtggttcagggcgagcggccgggccgggctgaggggacggtagacccccagctcctgaag
atggcgctggccccccaccccaaactgagggctgccctgttcccctccgggccccgggga
accggcccatcctcggacgtctccgtctaccacctgctgcagtcgctccacccgctggac
cccacccggctgttcggatggcaggcggcaaacaccctcaactccaccgagacttctgag
ctgcctcatttctccagccctcacctggtgggccgcttcgctctggtggagaacctggac
ttcctgtactacctccgtcacggccgaccgtcctttgcgttcgccacgttcctcgtccag
cagctgagcgtctgcagcgacgtcccactgctgctgcagcaggtctggcagcagacgtac
agtttggccctccagagttttaatgtcccgtctgtgacgtcagcgtccgtctgcttctgt
gagctgctgggggtcagtagcctcaaactgagggtcgacgtcagagcctcgaacgccatc
atgcagcactggagccaggacaacacacggacactacacactctggtgtctaaagctgaa
aagctggcagaggcggagcctggagcagcagaagagctgattggctacctggaagctgca
gtgacggacagcctggagcaaaaaggcatcggcaggtcgtcctacgaggcggctcaggag
tgggcgttgcctgttcagttctgtcagctccaccgtctgcagctcagctctgtttttccc
gcccgctgcgccgaggacggacagttcatccacttcctgttgttcgtccagctgcacagc
ttcccgcccccgcaggtgaggtcgctggcggcccggttcggcccgaccctgcgggcccac
ctgagtctggcctttcaggacttgcaggcgagcggtccgagggggcgtcgccccgtgtcc
ccgaccgggaccccggagcaccccagggagctgttccaggtcctcctgcagagccaggag
gaggcggagccctgcaggtacttgctgcaggaggcgctggtgcaacgctgcccgacgctg
gctgtcatggccgcctgccaacagggggaggagcttctgccgggcctctgcgtgtggttg
ttgacctccgtcgatgccgccgcctcgggggaagccgccgcccacctggccgacgccccc
cagcaccacgagtggacgctgcacgacctgtcggtcatctggaggacgctgctggggcgg
ggccacgtcaggcccctcctacgaggcttcgagctcttccagcgggactgccccctggtt
ctggtgctgaggatgtttgagttgtgctgcgacttcaggaaattctctgaggccaaagag
aagctgctggacttccagaggacgctgatcaccctgaggaacggcggcgcggcgccccct
ggtggcctccccctgcagtgggtggagagccaggcctccgtgctgctcctcgccatgctg
cgccgcgcctcctcgccgtacgaccgccaccggctgctgcagctgctcgccggcgtggac
aagctgctcaagtccaacggtccagacttcaggaagctcagtcagctcagccagctgctg
caggggtcagaggtcagcctgtccccccggctgctggagtgcagttctccctccgtccag
caggaggagttccaggccgcggtggacgctctgcaggccggggggcgctacggccaggcc
cggcgggtcgccctgctggccggcctgcccgtccagcgcctgctgctcagccagctgcac
caggaagcgacctcccagaggtccaagcgccagtggcgccggctggagacccgggtcggc
ctgtggcgccgatgtcacgagcggctgcgggccgagggcgccgacccggagtcggcctcc
cggttcttcctgtctcaggccgagccgccggaggccgggtccgatctgctggcggtgcag
gagcgctgcctgctgctctgcctcgccgctcgctggctgtcgctgctccgcccgccgccc
gccgcccggctgcggcgcctggaggaggagctgtgggccggccgggcgcggcgccacgtc
ctcgccgccgccgtggaggagcagagcgtcttcagcccgccgccgcccggcgccacgccg
gagaccgacccgtacgccgcgctcatgaaggagttctccttctccgacgtgtcgggcctg
aacaccgacagctgcctccggctggaggggctccccgggcccggcgaggaccgggaggag
cccggcaccgcccccccgctgagccccgaggagaggagcgctctggccgctctggtcggt
cagctgctagaagaaggcagcgtccacgaagccagccgggtctgccgctacttctccctg
taccaccgggacgtgtggctggtgctgcgctgcaggggcgtggcctccggagagctggag
ccggagcctctggaggaggaggagggtctgccgaggaagagcatgaccagctctccctcc
atgagcagcctcctctccttcgtcatgcttcccctccctgaagacgaggtcgccggcctc
ctccagaagctggtggatcagtgtcggcacggcaagaactactgcagacaggtcctgggc
ctgtaccagctctccaaggagctgcagtgctccttcctccagatgtgccgggaggagccg
cgctcggcgctggagaagctgctgctgtcggagcagccggagcgcttcaggaaggcccgg
gccttcgtccgggctcaggggctcggcgccgacgccgtggcccagctggtggccggcgcc
gtggtccgggcgctgctggccggctccgcccacgagctgcagcccgagaggcaggtgttc
cggccctctgagggtcgtgactctctggtccaactcgtcaaactgtgtgacgacccgaac
ctggtgggagtcaaactgctggagcacctcaacggcgttcacctgagagacctgagctgc
atcgtggagctgctggtcgtggctcacgactgcttcagcctcacctgtaacatggagggc
atcgtcagggtgctgcaggccgcacgccacctgagccacgcctacctggccccgggggag
cactacggcctgttggtgcgcctcctgacgggcgtgggcaggtacaacgagatgacctac
gtgtttgaccttctgcatcagaaccatcgatttgagatgctgctgaggaagaagatggat
atagacagaggacagacctccagtctgaagaccgccctgctggactacctgcgccgctgc
ctgccggctgacagtgagaagcacaacatggtggcgctgtgcttcagcatgaggagagag
atcggagagaaccacgagatggcagcgcgcacgcagctgaagatcatcgagtcgcagccc
tgggtggtgactcctgatctgaagagctctctggtcaaagtgttgggtctgctgagagac
gcagcagagagctactccaaggactcgtgtgtgcgtcaggccactcgctgtgtgagctct
gctaagctcgtctgtctccagcttcacttcctgaattccggctctgagctgcgtgtcgtc
cacctgagagccgccgagctgctggaggccgtcacggcgttaccacggtgctaccaggta
catcccataatactaccatctaccaggtacatcccataa
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