Pseudoliparis swirei (Mariana hadal snailfish): 130195342
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Entry
130195342 CDS
T09868
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130195342 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pswi03310
]
130195342 (roraa)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
130195342 (roraa)
Nuclear receptors [BR:
pswi03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
130195342 (roraa)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
130195342
NCBI-ProteinID:
XP_056272799
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Position
6:complement(12584121..12756272)
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AA seq
525 aa
AA seq
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MESPPDPASDPGNSASEPATPVRETLVNLETLRKAEHPAPVRRQTCSSTNREPHIKGISV
AKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDR
TSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQQRDRQQQPGE
AEPLTPSYGLSANGLTELHDDLSGYMDGHTPDGSKPDSAVSSFYLDIQPSPDQSGLDING
IKPEPICDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQM
TWQAFLQEEVESYQSKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKA
GSLEVVFVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSED
EIALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLR
ALCSRHTEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagccagcgacccgggcaacagcgcctcggagccggctacc
cctgtcagggaaaccctggtaaacctggagacgctccggaaagcggagcatccagccccg
gttcggaggcagacctgctcaagcaccaacagagaaccacatattaaaggtatctcggta
gcaaagaagacacatacatctcaaatcgaaataattccctgcaagatctgtggagacaaa
tcatcaggcatccattacggcgtgataacatgtgaaggctgtaagggcttcttcaggagg
agtcagcagagcaatgcagcctactcctgcccccgtcagaagaactgcctgatcgaccgc
accagccgcaaccgctgccagcactgccggctgcagaagtgcctggcagtgggcatgtca
cgagatgcggtgaagtttggccgcatgtcgaagaagcagcgagacagcctgtacgctgag
gtccagaagcaccggctgcagcagcagcagcagcgtgaccgccaacaacagcctggagag
gcggagccgctcacacctagctatggcctctcagccaatggcctcaccgagctccacgac
gacctcagcggctacatggatggtcacacccctgacggcagcaaaccagactcggcggtc
agcagcttctacctggacatccagccatctcctgaccagtcaggcctggacatcaacggc
atcaagccggagcccatctgcgacttcgcccctggctctggcttctttccttactgctcc
ttcaccaacggagaaacctcccccaccgtgtccatggctgaactagagcacctggcccag
aacatctccaagtcacacatggagacatgtcagtacctgagggaggagctgcagcagatg
acctggcaggccttcctgcaggaggaggtcgagagttaccagagcaagccccgggaagtc
atgtggcagctgtgtgctatcaaaataacagaggccattcagtatgtggtggagttcgcc
aagcgcatcgacggcttcatggagctgtgtcagaacgatcagatagtgctgctgaaagca
ggctctttggaagttgtgtttgtcagaatgtgccgtgcctttgactcgcaaaacaacaca
gtctattttgatggaaagtatgccggacctgatgtgttcaagtcattaggctgtgacgac
ttgatcagctccgtcttcgagtttgggaaaaacttgtgttctatgcacctgtctgaggat
gagatcgccctgttctccgccttcgtgttgatgtctgctgaccggtcttggctccaggag
aaggtgaaggtggagaaactccagcagaagattcaactggccctccagcacgtcctgcag
aagaaccacagagaggatggtatacttacaaagttgatatgcaaagtgtcgacactgcga
gcgctgtgcagtcggcatacagagaagcttacagctttcaaagcaatatatccagacatt
gtgcgtgcccacttcccccccttatacaaggagctgttcggatcagactttgagcagtcc
atgcccgttgacgggtag
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