Pseudoliparis swirei (Mariana hadal snailfish): 130195390
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Entry
130195390 CDS
T09868
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130195390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130195390
03036 Chromosome and associated proteins [BR:
pswi03036
]
130195390
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130195390
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
130195390
mRNA degradation factors
5'-3' decay
Decapping complex
130195390
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130195390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
130195390
NCBI-ProteinID:
XP_056272866
LinkDB
All DBs
Position
1:complement(4524813..4534721)
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AA seq
487 aa
AA seq
DB search
MATARTENVGPIVMGLNKQNGQLRGQTKPASVQPAPTALGKALGAPQMVGGAAQEGGGIK
FGDDWKKNLKIPPKDTRVQTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQIMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPMSVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPSSIDKSLYVAEFHTSGDDCEAIEEKP
GRRQDRA
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgccagaacagaaaacgtcggcccgatcgtcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccagcttcagtccagccagcacccacggctctaggg
aaggctctgggtgccccccagatggtcggcggcgctgctcaggaaggaggaggcatcaag
tttggagatgactggaaaaagaacctcaagatcccacccaaagacaccagggtccaaacc
tcagatgtgacgtccacgaaggggaatgaatttgaagactactgtctcaaaagggaactc
ctgatgggcatctttgagatgggttgggagaaaccttcccctatccaggaggagagcatt
cccatcgccctgtctgggcgggacatcctggctcgggctaagaacggaacggggaaaagt
ggcgcctatctcatcccgctgctggagagaattgacctgaagaaggaccacatacaggca
cttgtcatggttcccacccgtgagctggctctgcaggtgagccagatctccatccagatc
agcaaacacctggggggcgtcaaagtcatggccaccaccgggggcaccaacctgcgagat
gacatcatgcgtctggacgagaccgtgcatgttgtcatcgccacgccgggtcggatcctg
gacttgataaagaagggagtggcaaaggtggaccgagtccagataatggtgatggatgag
gccgacaagctgctgtctcaggacttcgtggtgctcatcgaggatatcatcagcttcctg
gccaagaacaggcagatcctgctctactccgccacctttcccatgagcgtgcagaagttc
atggccaagcatctccagaagccctacgagatcaacctgatggaggagctgactctgaag
ggcatcactcaatactacgcctacgtcacggagaggcagaaagtccactgcctcaacacg
ctgttctccaggcttcagatcaaccagtcgatcatcttctgtaactccactcagagggtg
gagctcttggccaagaagatcactcagctgggctactcctgcttctacatccacgccaag
atgatgcaggaatacagaaaccgagtctttcacgacttcaggaacgggctgtgcaggaac
ctggtctgcactgatctcttcaccaggggcattgacatccaggcggtcaatgtagtcatc
aactttgactttcccaagaatgccgagacgtacctccatcgtattggaagatccgggcgc
tttggtcacctgggcctggccatcaacctgatcacctccgaggaccgcttcaacctgaag
tccatcgaggaccagctggtgaccgacatcaagcccatccccagcagcatcgacaagagc
ctctacgtggccgagttccacacgtccggcgacgactgcgaggcgatcgaggagaaaccg
ggacgccgacaggaccgtgcctag
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