Pseudoliparis swirei (Mariana hadal snailfish): 130195398
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Entry
130195398 CDS
T09868
Symbol
sdc3
Name
(RefSeq) syndecan-3 isoform X1
KO
K16337
syndecan 3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04514
Cell adhesion molecules
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130195398 (sdc3)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130195398 (sdc3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pswi00535
]
130195398 (sdc3)
Proteoglycans [BR:
pswi00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
130195398 (sdc3)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Phage_zn_bind_6
Motif
Other DBs
NCBI-GeneID:
130195398
NCBI-ProteinID:
XP_056272877
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Position
1:10520022..10562585
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AA seq
492 aa
AA seq
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MKLPWLLALTALLAHTATGQTWSPSIDDEGSTRDEFYDDEDLYSGSGSGFSPQHNCTSQR
TSVLGISVRPTSAGVSFTTEEPLLLSTTQANGPAPSASPAAEPSPNPEEPIVTPMPTEAD
GESGIFWENESELEKERERELERERDKEQEQETQRELENEREREKQLERERERERERERV
REMEREKEKEREREREREREKERERQKERELEREKELERIRVAAQTTAAPRSPAAIPVVT
TNQTTSPAESEAPYAGSDDLSTTEEEEDVYLSPEPSAYFPVFDMEATTEDDMSTTAETTP
EPMTAAPATNTTTTNTTTTTTVKTRVPFRPRVPMTTGTQAVPTEGTSHPQQPTTTQEGNN
EAGAAGPSGDFEIRDDHRNGLGRGIMPVDPDLIGNTVDAGSSAAQLPQKNILERKEVLIA
VLIGGLLAVVFADFLVIAVIVGGVVGALFAAFLVMLLVYRMKKKDEGSYTLEEPKQATVT
YQKPDKQEEFYA
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgccttggctgctggcgctcaccgcgctgcttgcgcacaccgccacgggacag
acttggtccccgtctattgatgacgaaggctcgacgagagacgagttctacgacgatgag
gacctctactcgggctccggctccggcttcagccctcaacacaactgcacatcacagcga
acatctgttcttggcatcagtgtgaggccgacatcggcaggtgtgtccttcacgacagaa
gagcccctcctcctctccaccacgcaggccaacggccccgccccctccgcctcacctgca
gctgagccaagccccaacccggaggagcccatcgtcaccccgatgcccactgaagctgat
ggagagagtggtatattctgggaaaacgagagtgagctggagaaggagagagagagagag
ttggagagggagagagacaaggagcaagagcaagagacgcagagggaactggagaacgag
agagagagggagaaacagttggagagggagagggagagggaacgagagagggagcgggtc
cgagagatggagagagagaaggagaaagagagagaacgcgagcgagagagagagcgagag
aaagagagagagaggcagaaagagcgtgagcttgaaagagagaaagagctggagcgaatc
agggtcgccgcccagaccaccgccgccccacgatcccctgcagccatccccgtggtgacc
accaaccagacaaccagcccggcagaaagtgaggcgccctatgccggttcggacgacctg
agcaccacagaagaagaagaggacgtctacctgtcgcctgaaccctcagcttatttccca
gtctttgacatggaagccaccacagaagatgacatgtccacgacagcagagaccaccccc
gagccaatgacagctgcacccgccaccaacaccaccaccaccaacaccaccaccaccacc
actgtcaagaccagggtccccttcaggcccagggttcccatgacgacaggcactcaagcg
gtgccaacagagggaacgagccatccgcagcagcccacaactacacaggagggtaacaac
gaggcgggtgctgcagggccgagtggagacttcgagatccgcgatgatcatcgtaatggt
ctgggtcgagggataatgccagtggatcccgatctgatcggcaacacggtggacgcagga
agctctgccgcccagctgccacagaagaacatcctggagaggaaggaggtgttgatagct
gttctgattggtggactgctggcggtggttttcgctgacttcctggtcatcgcggtgata
gtgggaggagtagtgggcgccttgtttgcggccttcctcgtgatgttgctggtctacagg
atgaagaagaaggacgaggggagctacacactggaggaacccaaacaggccaccgtcacc
taccagaaaccagacaagcaggaggagttctacgcataa
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