Pseudoliparis swirei (Mariana hadal snailfish): 130195469
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Entry
130195469 CDS
T09868
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pswi03009
]
130195469 (ighmbp2)
03012 Translation factors [BR:
pswi03012
]
130195469 (ighmbp2)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130195469 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
130195469 (ighmbp2)
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
Other ribosome biogenesis factors
130195469 (ighmbp2)
Translation factors [BR:
pswi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130195469 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
ResIII
DEAD
nSTAND3
Helicase_RecD
AAA_16
AAA_22
IstB_IS21
SLFN-g3_helicase
UvrD-helicase
DnaB_C
ABC_tran
Flavi_DEAD
AAA_25
NPHP3_N
AAA
PhoH
Zot
HEM4
AAA_31
ATPase
SRP54
ATPase_2
AAA_18
Motif
Other DBs
NCBI-GeneID:
130195469
NCBI-ProteinID:
XP_056272980
LinkDB
All DBs
Position
6:11538661..11544807
Genome browser
AA seq
996 aa
AA seq
DB search
MAVEQFVSKTLELLQEEREAEIEETRIWQENISLKDLQHKGVCLLKLQIGSQSTGLYGRT
VVVLEPRKHLGFLALPSNSFGPGDIVGLYDTGGCTPASQIGTGIVTRVSQVSISVAFDDS
NDGLSFDTGALHNLLKLANDVTYKRMKSALNTLNGYSNGPAANLINVLFGDSQPSSQSQP
NKVQFFNSNLDDSQREAVSFTLSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLARSKAKVLRLGHPARLLESIQKHSLDAILAQSDNANIIADIRKDIDK
AFIGIKKMRDKGQRVNYKREIGELRKELKTREATAITQILKRADVVLSTNTGASGSGPLK
FLPAEHFDLVVIDECAQALESSCWIALLQARKCILAGDYKQLPPTIKSQMAASKGLSLSL
MERLIQMYGDSVVRMLTVQYRMNSAIMDWASKEMYQGRLTAHSSVERHLLKDLPGVACVE
ETSTPLLLIDTAGCGLSEMEVTDEQSKGNQGEVDIVELHITALTEAGVKAKDIAVIAPYN
LQVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRHIAVVCDTQTVQTHAFLKSLIKHMTEFGEVRTAFEYMQDLVPQNYTRDHKDTKANT
SASSSTSTKQKVKDQPPSRAKPQHEKCPGGSSNEHAAATQKHTKSVTEEEQDMTRCAEIR
VQVESFRKDLSQKELQFPSSFNSHDRLLVHQIAEELGLVHESKGEGKDRCIMVTRPLVST
PAERPTQAEEEEEDDDDDDDEEPQENETIPNPQSEPLCQPPLDLKSLHLDRMKREQQKRE
EHAQQKQQQNNIPPALAQSSKKPKSAKGKSRVKPGACGIAAAAAPDEDFDTLLDAVIKAE
RVCSFVRCKASVLMLGQLCLFCNRQYCLGHHIPEVHGCGDKAKSHARMRISKEGVLYAGS
GKKDKSMDPNKKAYLQRKLDSKLKAMSSQRKPKNKE
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggcggttgaacaatttgtgtcaaagacactcgagcttctccaggaggaaagggaggct
gagatagaggagaccaggatatggcaggagaacatctctctcaaagatcttcaacataaa
ggagtttgcctgctgaagttgcagataggaagtcagtccacaggcctgtacggtcgcaca
gtcgtcgtccttgaaccaagaaagcatcttggtttcttggctctgccaagcaacagcttt
ggacccggggacatagttgggttgtatgacactggtggatgcaccccagcctctcagatc
ggcacaggaatagtgacgagggtcagccaagtttctataagtgtggccttcgacgattca
aatgatggcctcagctttgatacgggtgcgcttcacaacctcctaaagttggcaaatgac
gtcacatacaaacggatgaaaagtgccttgaatacattgaatggatacagcaatggacca
gctgccaatctgataaatgttctttttggggactcacaaccatcctcgcaatcacagcca
aataaagtacaattctttaactcgaacctggacgattctcagagagaagctgtgtccttt
acgctgtctcagagagaactggctgtgattcatggaccaccaggcaccgggaaaaccacc
acagtggtggagatcatcttgcaagcagtaaaacagggacaaaaggtactttgctgtgcg
ccctctaacgtggctgtggataatttggtggagaggttagcccggtccaaggcaaaggtc
ctcaggctgggtcaccctgccagacttctggagtctatacagaaacattctctagacgcc
atccttgcacagagtgacaacgcaaacatcatcgctgacatccgaaaggacatcgataaa
gcatttattggaataaagaaaatgcgtgataaaggacagcgggtgaactacaaaagagaa
ataggggagcttagaaaagagctgaaaacaagggaagcaacagccataacgcagatccta
aaaagagccgatgttgtgttatcaaccaacacaggtgcttctggcagtggtcctctgaag
ttcctgccagcggagcattttgatttggtggtgatagacgagtgcgctcaggcgctggag
agcagctgttggatcgccctgctccaagcacgcaagtgcattctggctggagactacaag
cagttaccacctactatcaaatcacaaatggctgcatctaaaggcctgtcactcagtctc
atggagagacttatccagatgtacggggactcagtggtccggatgctcacagttcagtac
cgcatgaacagtgccatcatggactgggcctccaaagagatgtaccagggaagactaacc
gctcacagctctgtagagagacacctgttaaaggatttaccaggagtcgcctgtgttgaa
gagaccagcacgccacttctcctcattgacactgcgggctgcggcctgagcgagatggag
gtcacagatgagcagtccaaaggcaatcagggtgaggtcgacattgttgaactgcacata
acggccttgactgaagctggagttaaagctaaagacatcgctgttattgctccatacaat
ctacaagtcgatcttctgcgtcagaaactttctgcgaggcatccggagctggagatcaag
tctgtggatggatttcaaggcagagagaaagaggctgtggtgttgtcgttagttcggtcc
aacagaaagggggaagttggattcctggcagaggacagaaggatcaacgtggccgttaca
cgtgcgagacgtcacatcgctgttgtgtgcgacactcagactgtccagactcatgctttc
ctgaagtccctgatcaagcatatgactgagtttggcgaggtcagaacagcatttgagtac
atgcaagacctcgtgccacagaactacacccgtgaccacaaagacacaaaggctaatacg
tctgccagcagctccacatccaccaaacagaaggtgaaagatcagcctccgagccgggcg
aagccacaacacgagaagtgtcctggtggcagcagtaatgaacatgctgctgcgacacag
aagcacacaaagtcagtgaccgaggaagagcaggacatgaccagatgtgctgagatcaga
gtgcaggtggagagctttcgaaaggacttaagtcagaaagaactacagttcccatcatca
tttaactctcatgaccgcctgctggtccaccagatcgctgaggagctgggcctcgtgcat
gagagtaaaggtgagggtaaagacaggtgtatcatggtgaccaggcctctggtgtcaaca
ccggctgagaggccaacacaagcagaagaagaagaagaagatgatgatgatgatgatgat
gaagaacctcaggaaaacgaaacaatccccaacccccaaagtgagccgctgtgtcagcct
ccattagacctgaaaagtttacatttggatcgaatgaagagggagcagcagaagagggaa
gaacatgctcaacaaaaacagcaacagaacaacatcccacccgcgttggcccagtcgtca
aagaagcccaagtctgctaaaggaaagagccgagtgaagcccggcgcttgtggcatcgct
gctgctgccgctccggatgaggactttgacacgctcctcgacgccgtcatcaaggctgag
cgcgtgtgcagcttcgtcaggtgcaaagcgtctgtgctgatgctcggacagctttgcctg
ttctgcaacaggcagtattgtctcgggcatcatatcccggaggtccacggctgtggagat
aaagccaagtctcatgctcggatgagaataagcaaagaaggcgttctgtacgcaggaagt
gggaagaaagacaaatccatggaccccaataagaaagcctatctacaaaggaaattggac
tctaaattgaaagctatgtcatcacagaggaaacccaaaaacaaagaatga
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