Pseudoliparis swirei (Mariana hadal snailfish): 130195500
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Entry
130195500 CDS
T09868
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130195500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130195500
03041 Spliceosome [BR:
pswi03041
]
130195500
03036 Chromosome and associated proteins [BR:
pswi03036
]
130195500
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
130195500
Spliceosome [BR:
pswi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130195500
Complex B
130195500
Complex C
U2 SnRNP specific factors
130195500
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
130195500
TFTC complex
130195500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
130195500
NCBI-ProteinID:
XP_056273044
LinkDB
All DBs
Position
6:22577989..22603620
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGITHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTVEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVCSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRKHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPLDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLIVIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGPGQWASLVRLINPIQGTTLDLVQLEQNEAAFSVAVCRFPNTG
DDWYVLVGVAKDMILNPRSVSGGFIYTYRLVSGGEKLELVHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTSIHTIGQRVIVTDVQESLFWVRYRRHENQ
LIIFADDTYPRWVTTACLLDYDTMACADKFGNISIVRLPANTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIVNYHVGETVLSLQKTTLIPGGSESMVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacatcaccctccagcgtgccacgggcatcactcatgccatccatgga
aacttctcaggaaccaaaatgcaggagattgtcgtctccaggggaaagatcttggagtta
ttgcggccggatgccaacacagggaaggtgcacactctgctcacagtggaggtgtttggc
atcattcggtccctgatggccttcaggctcactggaggaaccaaagactacattgttgtt
ggcagcgacagtggtcgaattgtcatcttggaatatcatccgtcaaaaaacatgttcgag
aagatccaccaggaaacgtttgggaagagcggctgccggcgcatcgtccccggacagttc
ctggctgtcgatcctaaaggccgagctgttatgattggagcgatagagaagcagaagctg
gtttatattctgaacagagatgcagctgccaggctgaccatctcctctccgctggaagca
cacaaggcgaacacactggtctaccatgtcgtcggagtcgatgtcggctttgagaacccc
atgtttgcctgcctcgagatggattatgaggaagctgacaatgacccgacaggagaagcg
gccgccaacactcaacagacactcaccttttacgagctggacctgggcttaaatcacgtt
gtccgcaagtacagcgaggctctggaagagcatgggaatttcctcatcactgttcctggt
ggttccgatgggcccagtggcgttctgatctgctccgaaaactacatcacttacaagaat
tttggagaccagccggacattcgctgtcccatcccgcgacgcaggaatgacctggatgac
ccggagcgtgggatgatatttgtctgctcagccacccacaagaccaagtccatgttcttc
ttcctggcccaaactgagcagggagacatctttaaggttaccctggagacggatgaagaa
atggtcacagaaatcaggctgaaatactttgacacgatccctgtagcaacagccatgtgt
gtcctgaagactggcttcttgtttgtgtgttcagaatttggaaaccattacctttaccag
atcgctcacttgggtgacgatgacgaggagccagagttctcctctgcaatgccgttggaa
gagggagacacatttttcttccagccccgccccctcaagaaccttgtgctggtggacgag
caggagaacctctcgcccatcatgtcctgtcagattgcagatttagccaatgaagataca
ccacagttgtacgttgcctgtggtcgaggaccccggtctactctgagggtcctgagacat
ggactggaggtatcagagatggccgtgtctgagctgcccggtaaccccaacgctgtgtgg
acagtacgcaaacatgtggaagacgagtttgatgcctacatcatcgtgtctttcgtgaac
gctactctggttctgtccatcggagagactgtagaggaagtgacagattctgggtttctc
ggaacgacgcctactctctcctgctcgctgctcggcgaagatgcgctggtgcaggtgtac
ccagacgggattcgccacatccgtgcggacaagcgtgtgaatgagtggaagactcctggc
aagaaaaccattgtccgctgcgcagtgaaccagcgacaggttgtcatcgccctcaccgga
ggggagctggtctactttgagatggacccgtctggtcaactcaatgagtacacggagcgg
aaggagatgtctgcagacgtggtttgtatgagcctcgcaaacgttccacctggtgagcag
cgctcgcgtttcctggcagtggggctggttgacaacaccgtccgaatcatctccctggac
ccactggactgccttcagccgttgagtatgcaggccctgccagcccagccagagagtctg
tgtattgttgagatgggaggggtcgagaaacaggatgaacttggagaaaagggatccatt
ggcttcctctacctcaacataggacttcagaacggtgtgctgctgaggactgtgctggac
ccagtgaccggtgacctgtcggacaccagaacacgatacctggggtctcgacctgtcaaa
ctcttcagagtccggatgcaaggacaagaagctgtgctggcgatgtccagtcgctcctgg
ctcagctactcgtaccagtctcgcttccacctgacccctctgtcatatgagaccctggag
tacgcctccggctttgcatccgagcagtgccccgaaggcatcgtggccatttccaccaac
acactgagaatcttggctttggagaagttaggagcagtcttcaaccaggtggcctttcct
ctgcagtacactcccaggaaatttgtgatccacccggagactaataacctaattgtgatc
gagacggaccacaatgcctacactgaggcaaccaaagcccagagaaagcaacaaatggct
gaggagatggtggaggctgctggtgaagacgaacgagaactggctgctgagatggccgct
gccttcctcaacgagaatctcccagaagccatttttggtgcacccaaagctggacccggg
cagtgggcctcgctggtgcgtctcatcaaccccatacagggtacaacactggacctggtg
cagctggagcagaacgaagctgctttcagcgttgccgtgtgtcgtttccccaacacagga
gatgattggtatgttcttgtgggcgttgccaaagacatgattctcaaccccagatccgtg
tccggtggcttcatctacacctatcggctcgtcagtggaggcgagaaactggagctcgtg
cacaaaaccccggtagaggacgttccattggccattgcgccattccagggaagagtcctg
gttggagttgggaaactgttgagaatctacgacctgggcaagaagaagctgctccgcaag
tgtgaaaacaagcacgttcccaacctcgtgacgagcatccacaccatcggccagcgggtc
atcgtgaccgacgttcaggagagcctgttctgggttcgttacaggcgccacgagaaccag
ctcatcatcttcgccgacgacacgtatccccgctgggtgaccacggcctgtctgctcgac
tacgacaccatggcctgtgctgacaagtttgggaacatcagcattgtgcggctacccgcc
aacaccagcgacgatgtggatgaagaccccacggggaacaaggctttatgggacagaggc
ctccttaatggagcatcacagaaggctgaggtgatcgtgaactaccatgttggtgagacg
gtgttatcgctccagaagaccacgctgatccctggaggttcggagtccatggtctacacc
actttgtctggaggcatcggcattctggtcccattcacctcacatgaggaccatgacttc
ttccagcatttagagatgcacatgcgctctgagtttcctccgctttgcggcagagaccat
ctcagctttagatcctactacttcccagttaagaatgtgattgacggagatctatgtgag
cagttcaacagcatggaccctcataagcagaaaagtgtggcagaagagctggacaggacg
ccacctgaggtctctaagaaactggaggacattcgcactcgctacgccttctaa
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integrated database retrieval system
