Pseudoliparis swirei (Mariana hadal snailfish): 130195531
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Entry
130195531 CDS
T09868
Symbol
cntn1a
Name
(RefSeq) contactin-1a
KO
K06759
contactin 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130195531 (cntn1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130195531 (cntn1a)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
pswi00537
]
130195531 (cntn1a)
Cell adhesion molecules [BR:
pswi04515
]
Immunoglobulin superfamily
Contactins
130195531 (cntn1a)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
pswi00537
]
Others
130195531 (cntn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
ig
Ig_2
V-set
Ig_DSCAM-DSCAML_C
Ig_5
Pur_ac_phosph_N
Ig_4
C2-set_2
Sp38
Motif
Other DBs
NCBI-GeneID:
130195531
NCBI-ProteinID:
XP_056273089
LinkDB
All DBs
Position
6:complement(8963229..8978764)
Genome browser
AA seq
766 aa
AA seq
DB search
MGQNITLECFALGNPVPEIRWKKLDGQLPPNHELRMSGAHLHLYNVQYEDAGSFQCEAVN
SRGKDYHAAHLSVEAFPEWVEQISSTEQDLSRDYTMSCIVSGKPEPRIRWLKNGQLSHRK
EMRFSRLTFDDSGMYQCIAENHHGLIYATAELRVYACAPTFEHNPVKRVLAAKNGRVVIE
CRPKAAPKPSFSWSKDTELLHNKTRVLIWEDGSLEIRNVTRDDEGRYTCFAENDRGKANS
TGSLVVTESTKITLAPSNGDVKVGENTKLQCVASHDPILVITFVWALDGRVIDLHKESHH
YERTLNGSSNGELLIKNLQLKHAGRYTCTAQTPIDNVTAGAHLVVRGPPGAPSGVRLVNK
TDKSVTLQWSRGADNHSPISKYTIQYRDSFSEDVWKNATTSPADVEGNAKMATVVDLLPW
MEYEFRVIATSTLGKGDPSSPSPKDRTVEAFPVVAPSDVGGGGGTSRELTITWTPVQPQY
YYGPDFGYIVAFKPHDGAQWMRVMVANPQAKRFIHRDASIPPMTEYRVKVKAFNGKGEGP
FSLTAAIYSSQDAPTEAPGRVDGKALSATDAIVWWLPLSQGSVDGYQVKYWRIPEDSEEG
AKTAVAPGSENHTRLEGMKADSHYIVEVRGYNSAGYGPVSEHHQIHTKKPPPTQALKIIG
QKIKGRSVVNIAWEKVKPLANEAAVAGYKVLYRQVGHTTGTLYTTTKEFIDLPLHAVGKY
VVEVRAHSEGGDGAMAHIDITGGGVMSAPSLSVLSLLLLAALCLNL
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggggcagaatatcaccttggaatgcttcgctctggggaatcctgtccccgagatccgc
tggaagaagctggacggacagcttccccccaatcacgagttgcggatgtcgggcgctcac
ctgcacctgtacaatgtgcagtacgaagacgcgggcagcttccagtgtgaggcggtgaac
tcgagagggaaggactaccacgctgcccacttgtctgtggaagcttttcctgagtgggtg
gagcagatcagcagcacagagcaggacctcagcagggattacaccatgtcctgcatagtc
agcggcaaacctgagccacgcatccgctggctgaaaaatggacaactgtctcacaggaaa
gagatgaggttcagccgcttgacgttcgacgactcagggatgtaccagtgcatcgcagag
aaccaccacggactcatctatgccaccgcagagctgcgtgtgtatgcctgtgcgcccacg
tttgaacacaaccccgtgaagagagtcttggcagccaaaaacggccgggtggtgatcgag
tgtcgacccaaagcggctccgaagccgtccttctcctggagcaaagacaccgagctgctc
cacaacaagacccgggtgctcatctgggaggacgggagcctggagatccggaatgtgacg
cgcgacgatgaaggcaggtacacctgcttcgccgagaacgaccggggcaaggccaacagc
acgggctctctggtggtcacagagtccacaaagatcaccttggcaccgtccaatggagac
gttaaagtgggagagaacaccaagttgcagtgcgtcgcgtcacatgaccccatcctggtc
atcaccttcgtctgggccctggatggccgggtcattgacttgcacaaggagagtcaccat
tacgaacgcaccctgaatggaagctcaaacggcgagctactgatcaagaacctccagctg
aagcatgcaggtcgctacacctgcaccgcacagacccccatcgacaatgtgacggccggg
gcccacctggtggtccggggtccccccggcgccccaagtggcgtgcggctggtgaacaaa
actgacaagagtgtaacgttgcagtggagccgtggagcagacaaccacagccccatctcc
aaatataccatccagtacagggactccttctcagaggatgtctggaagaacgccacgaca
tctcccgcggatgtagaggggaatgcgaagatggccacggtggtggatttgctcccctgg
atggaatacgagttcagagtgattgccactagcactctggggaaaggagatccgagcagc
ccgtcgcctaaagacagaaccgtggaagcatttcctgtggtggcgccctctgacgtcggt
ggcggcggaggaaccagcagagaattgaccatcacgtggacgcctgtgcagccacagtac
tactacgggcctgactttggctacatcgtggccttcaaaccacacgatggagcccagtgg
atgagggtgatggtagccaacccccaggccaagcgcttcatccacagagacgcctccatt
cctccaatgacagagtaccgagtcaaagtcaaggcattcaatggaaaaggagagggaccc
ttcagcctaacggccgccatttattcttcacaggacgctccgactgaagctcctggaagg
gtcgacggcaaagctctctctgccacggacgccatcgtgtggtggctgcctctctcacag
ggcagtgtggacggataccaggtgaagtactggaggattccggaagacagtgaagagggc
gccaagacggcggtggcacccggcagtgagaaccacaccaggctggaggggatgaaggca
gactcccactacattgttgaggttcggggctacaactctgcaggatacgggccggtcagc
gaacaccaccagatccacaccaagaagccccctccaactcaagctctcaaaataattggt
caaaaaataaagggccggtcggtggtaaatattgcctgggaaaaggtgaaaccgcttgcg
aacgaggccgcagtagcaggttataaagtgctgtacaggcaggttggccacaccacaggc
actctgtacacaaccaccaaggagttcatagacctgccccttcacgcagttgggaaatat
gtggtggaggtccgggcgcactccgaggggggagacggggccatggcacatatcgacatc
acaggtgggggtgtcatgtccgccccgtctctcagcgtgctctccctgctcctgttggcc
gcgctgtgcctgaacctctga
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