Pseudoliparis swirei (Mariana hadal snailfish): 130195582
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Entry
130195582 CDS
T09868
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130195582 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130195582 (cnot4a)
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130195582 (cnot4a)
04121 Ubiquitin system [BR:
pswi04121
]
130195582 (cnot4a)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130195582 (cnot4a)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130195582 (cnot4a)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130195582 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130195582 (cnot4a)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130195582 (cnot4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-RING_2
Nup35_RRM_2
zf-C3HC4_2
zf-C3HC4
RDD1
DZR_2
Torus
Motif
Other DBs
NCBI-GeneID:
130195582
NCBI-ProteinID:
XP_056273164
LinkDB
All DBs
Position
6:9210301..9221210
Genome browser
AA seq
803 aa
AA seq
DB search
MSHSPEMKDDLMECPLCLEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADSEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYLRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKINPSFLQPPACGTEKSKSKSNSTQRPNSTNGKDGWPTLSGHNKLANGLSEERKS
PPLLDYLDQEVMASDGLDAELGPGQHSALCPFSSNCGSNSPSDKPPESIGMVNGETLQQM
PTSDSPSPPPGLTKPSLVVPISLSDLTARSPFEGAAAESQSLFSDNSNFRHPNPLPSGLP
PFPSSSRANSDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSSKQQDDDLGFDPFDVT
RKALADLIEKELSVQDQSPFSPGLLSHGGSSHGLGLPPLNSNPGASHHFPSGLPRLPQLH
HRAIYSSFSFPGSQNSQASQQQQTSRHPWMGVPTRNNLTHLNHSASAASHSNFLDLNLPP
QHNTGLGGIPISENGGSIDGLNVKEWQDGLRALLPNININFGGLPNSSSSSSSSSSNSVN
HIGGPVGPAGISHSLSWDSTASWMDPAIITGRNCIPPSAGNSLDCLQDDNPPHWLKSLQA
LTEMDGPASSAAPTPPQPLHSGLLDAHLPLHHRAAGGWAPYMPPPTANPASQFHSPPPGF
QTTFRPPGQPATELLQSAAVDRH
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccctgaaatgaaggacgatctcatggagtgccctctgtgcttggagccg
ctggagattgatgacgtcaacttcttcccctgcacctgcggctatcagatctgccgcttc
tgttggcatcgcatccgcacagatgagaacggcctgtgccccgcctgcagaaagccatat
ccagaggaccccgctgtgtacaaacctctctcacaagaggagatccaaaggataaagaac
gaaaagaagcagaaacagaacgagaagaagcagaaggtgacagaaaaccgaaagcatctg
gccagtgtcagagtggtccagagaaaccttgtgtttgtggtggggctctcacagcgactc
gccgactcagaggtcctaaaacgaccagaatattttgggaggtttgggaaaatccataaa
gtggtcatcaacaatagcacatcctacgcaggttcacaggggccaagtgccagcgcttat
gtcacttacctccgctctgaagatgctttaagagcaatacagtgtgtgaacaatgtggtt
gttgatggcagaactctcaaggcttctttaggcacaacaaagtactgcagttacttcctt
aaaagtatgcagtgtcccaaacctgattgtatgtatctacatgagctcggggatgaagca
gctagctttactaaagaggaaatgcaggcagggaaacatcaagagtatgagcagaaactc
ctccaagacctctataaaattaaccctagctttctacaacctccggcatgtggaacagag
aagtcaaagagtaaatccaactccacacagagacccaacagtaccaacggtaaagacggg
tggccgacgctgtcaggacacaacaaactggccaacgggctttcagaggaacgcaagtct
cctccgctgctcgactatctagaccaagaagtgatggcttcagatgggctcgacgcagag
ctgggtcctggtcagcattctgcattgtgccccttctcctccaactgtggcagcaacagt
cccagtgacaaaccgccggagtcgatcggtatggtaaatggagagactttacaacagatg
cccaccagtgactccccttctcctcctcctggtttaaccaagcccagcctcgtggtgccc
atcagcttgtcagacctcacagcccgttcacctttcgagggggcggccgctgagtcccag
tcgctcttttcggacaacagtaacttcagacaccctaaccctctcccttccggcctgccc
cccttcccgagctcctcccgcgccaattctgactggcccatgacccctgaaccacagagc
ctcttcacatcagacacaataccggtgtcttcttccacagactggcaggcggcctttggt
ttcggctcgtccagcaaacagcaggacgacgatctgggcttcgatcctttcgacgtcact
cgcaaggccttggcggacctgatagagaaggagctgtcggtgcaggaccagagccccttc
tccccggggctcctctcccacggtgggagcagccatggtctcggcctgccgccgctcaac
tcaaaccccggtgcctctcaccacttccccagtgggctgccgcgcctcccccagctccac
cacagagccatctacagctccttcagtttcccgggcagtcagaacagccaggccagtcag
cagcagcaaacctccagacacccctggatgggcgtcccgacacggaataacctcacacac
ttgaaccactcagccagtgctgcctcacacagtaatttcctggacctgaatctgccccct
cagcacaacacagggctaggagggatccccatctcagaaaacggtggctctatagatggc
ttaaatgtgaaagagtggcaggacggtctgagagctctcctgcccaacatcaatataaat
ttcgggggcctcccaaactcctcttcctcgtcatcctcctcatcctccaacagtgttaac
cacatcggtggtccggtagggccagcaggcatctcacacagcctgagctgggacagcaca
gccagttggatggaccccgcgatcatcacaggtagaaattgcatcccgccctcagcaggc
aacagtttagactgtctccaggatgacaatccaccacactggctcaagtcgctgcaggcg
ctcacagagatggacggcccggccagctcagcggcgcccactcccccccagcccctccac
agcggcctcctcgacgcccacctccccctccaccacagagccgccggcggctgggctccc
tacatgccccctcccacagccaaccccgccagccagttccactcccctccccccggcttc
cagaccactttcagacccccgggacagcccgccaccgagctgctacagagtgccgctgtg
gaccgccactga
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