Pseudoliparis swirei (Mariana hadal snailfish): 130195715
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Entry
130195715 CDS
T09868
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130195715 (lrrc4ca)
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
LRR_14
V-set
LRR_9
Ig_2
LRRNT
Ig_6
DUF7617
Sp38
DUF6821
Syndecan
Motif
Other DBs
NCBI-GeneID:
130195715
NCBI-ProteinID:
XP_056273368
LinkDB
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Position
6:complement(17499489..17501435)
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AA seq
648 aa
AA seq
DB search
MLYKMTSSQKQQMMRGPRWNRALSDPFFVLLLALQLLVVAGLVRAQTCPSACSCSNQFSK
VICTRRGLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRKIELGA
FNGLATLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVKLDELEMSGNQVAVIRPGSF
KGLIHLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPTHHKGQYIGELDQNYFHCYAPVIVEP
PVDLNVTEGSAAELKCRANSLTSVSWITPNGSVMTHGAYKIRISVLNNGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENSSFSYFTTVTVETIESPHNEVFTTAVQQKAGP
TSSAGSWESVSPTSTTTTTVRTLLYTRTTEKTYTIPVTELGGEGSLNGLDEVMKTTKIII
GCFVAITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCVTGGPGMEGHLTLPP
LEHEHLNHYNAYKTVYNHASTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgttatacaagatgacctcctctcagaagcagcagatgatgcgaggtcctaggtggaac
cgggccttgtccgaccctttttttgtgctgcttctggccctccagctgctggtggtggca
gggctggtacgtgctcagacatgcccctctgcctgctcctgtagtaaccagttcagcaaa
gtcatctgcactcgccgaggcctgcgggatgtccctgatggcatctctaccaacacccgc
tatctgaatctgcaagaaaatctgattcaggtcataaaggtggacagcttcaagcaccta
cgacatctggagatccttcagctgagcaaaaaccacatacgcaaaattgaactgggggcc
ttcaatgggctggccaccctcaataccttggagctttttgataaccgcctcaccacgatc
ccaaacggggcatttgagtacctgtccaaactaaaggagctttggttaagaaataacccc
atagagagcattccctcttatgctttcaacagagtgccctcattacgtcggttggacctt
ggggagctcaaacgtctctcctacatatctgagggggcctttgaagggctgagcaatctg
cgctacctaaatctgggaatgtgcaatctgaaggaaattcccaatcttattcccctggtg
aagctggatgaactggagatgtcggggaaccaggtagctgtgatccgacctggctctttt
aaggggctcatccatttgcagaagctatggatgatgcatgcccagatccagaccatagaa
aggaactcttttgatgacctgcagtcattagtggagctcaatctagcccataataacctg
acccttttgccccatgatctcttcacccctttacatcacctggagagggtgcacttgcac
cacaacccgtggaattgtaactgtgacatcctctggcttagctggtggctaaaggagatg
gtaccagctaacaccagctgctgtgcccgctgcagctcaccaacccaccataaaggacaa
tacattggcgagctggaccagaactactttcactgttatgctcctgttattgtggagcct
cctgtagacctaaatgtgacagaaggaagcgctgcagagttgaaatgcagagccaactcc
ttgacctcggtaagctggattacacccaatggttccgtcatgacacacggtgcttacaag
atcagaatctccgtgctgaataatggtactctgaactttaccaatgttaccatgcaggac
acaggtacatacacatgtatggtcagtaattctgcaggaaacacaacagcatctgccacg
ctcaatgtgtcctcgacagagaacagcagcttcagctacttcaccacagtgacagtggag
accatagaatcgccacataatgaagtcttcaccactgctgtgcaacagaaggcgggcccc
acatcttctgctggttcatgggagtctgtttctcccacgtctacaacgacaacaacagtc
cggactctgctctacactcgcaccaccgagaagacttacacaatcccagtcaccgagctg
ggtggggaaggctcactgaatggtttggatgaggtcatgaagacaaccaagatcatcatt
ggctgctttgttgcaatcacactcatggcagcagtcatgctgatcattttctacaagatg
cgcaaacagcaccaccagcagaaccaccacgcgcccacacgcaccatagagatcatcaat
gtggacgaggactgtgtaacaggaggcccgggcatggaaggccacctgaccctgcctcct
cttgagcatgagcacctcaaccactacaacgcctataagactgtgtacaaccatgcctcc
actatcaactccatacacagttcagcgcacgaacctttgttaattcgcgccagctcaaaa
gacaatgtacaagagacccaaatctaa
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