Pseudoliparis swirei (Mariana hadal snailfish): 130195927
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Entry
130195927 CDS
T09868
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130195927 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130195927 (edc4)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130195927 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
130195927 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EDC4L
WDR55
Apolipoprotein
PIN_8
Motif
Other DBs
NCBI-GeneID:
130195927
NCBI-ProteinID:
XP_056273703
LinkDB
All DBs
Position
6:complement(23894848..23917246)
Genome browser
AA seq
1409 aa
AA seq
DB search
MASNSSIDIKGATQHLRDILKLDRPGNNTDASSDGLRMPSFNGELNGLLGAAGLLGGTDR
STMSDSTRPISTDLCSTQECQIICLSGDDGSTCIPITSNNVEIVASQDTSINSKARGSNK
VKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVSFTERSLLKGFTGA
VTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGSKILDQIVVHIRRPEDSPLSSYRRLIWC
PFIQDEDNQDDTSQTLALLHEDLAEVWDLEVLRANHSSWPVDEADVKEGLIQIDGHTQRV
SEGALSPDGTVLATASHDGYIKFWQIYIEGVQDKPRCLHELRPHGGRPLSCLLFCDNHKR
QDPELVHTCAHAHHSQAVALFTFLSSSPLCSVPFWRFLITGADQNQELKMWCTVSWTCLQ
TIRFSPDLFNSSVLPSLKASLDLASEFLVLTDVQRKVLYVMELRQDLDKGKASFTAVSEF
LLTHPVLSFGVRDVAHCRLRHTEVLPAEEESESMTAEGTQGPTESKSGIQIKLYCVHTKS
LQDVQIWFQPNLSSTLFLTNSEPQDGFGFSDHLTDQSSDKESGSGSQTDLRKIPSLPATT
DFLSNSGASSRTKLMTPDAFMTPSTSVPASPGSSASSLTIVTALSSNSDSTNRAMDEVSQ
SPSRAENIGGSLTLSTSSPRAVSGVLMPGLENIQPLASPSGPLALDSPQVLDSPLLPPLA
SPTRARSPDVISSASTAMSQDMPEIASQTLQLQRGLVSSLEPLPLSALQTDSMASAASAL
HLLTSPRTANNGLLPLELGGADGLVGGAVEPEPRLNHTPSLLENALSQENPGAGGGSPDG
GVGHTPWPAAPDITRETRNSLRDNGLGECSRDESKDRHLGSPYHRRSYHLAHNDSQDAGA
EQSDPDDEVASLASSSGNCGSRSSHRLPVKDWKTSPRSSPKVKRKTKKDDNELSQSRQMD
SGQMNTEVQDELLMLLRSQQRELTDLRGQIEAMQSTIMAQVEHVLNNHQEQEQRRLERAL
AESQNHQQQLQEQLGQQLSDTLSTVLTNRMDKVLREEMKKTVPPAISKSLDPVTGQLSNT
IAAKLTAVEITLKDNVSKVVKSKNITDAIGRAAADALQGPIQAAYKDAFQGTVLPVFERG
CQSMFQQINDSFKQGTQEYILQLESHMNARKQREQEARDPVISQLQQTIESFLNSTEQLT
SSITANVRAEVQHQIQMMVGNLQESILSHVQRIVKGEVTLAMKEQQVAVTSSIMQAMRSA
ASTPVPTAHLDYQTQQANILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQH
PCPLSQPVLLSLIQQLSSSLTTRSELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKL
FAFLQQDPHSPLSKRARRLMMMLQGLVSH
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattctagtatagacattaagggtgcgacccagcatctccgggacatcctc
aagctcgaccgccccgggaacaacaccgatgcatcaagtgatggcctgagaatgccatca
tttaatggagagctgaatggtttattgggagcagccggccttctgggaggcaccgaccgg
tcaaccatgtcggactccaccagacccatctccacagacctctgcagcactcaggagtgt
cagataatctgcctttctggtgacgatggctccacctgtatccccatcacctccaacaac
gtggagatagtggcaagtcaggataccagcatcaacagcaaggctcgtggcagtaacaag
gtgaagattcaacctgttgccaagtacgactgggaacacaagtattattatggcagactg
atcgccgtgtccaactccttcctggcttacgccatcagaggagccaacaaccacgcaatg
atccgcgtcctgagcgtgagcttcactgagcgctcgctgctgaagggcttcaccggagcg
gtcacagatctggcttttgcccacctcgactcctcgctgctgggctgtgtcgacgaggcg
ggcaacctgatggtctggcagctcacctgcactgggagcaagatacttgatcagatcgtg
gttcacatccgacggccagaagactctccgctgagctcctaccgccgcctcatctggtgc
ccgttcatccaggatgaggacaaccaggacgacaccagccagaccctcgcccttctccac
gaagacctggctgaggtgtgggacctggaggtgttgagagccaaccacagcagctggccc
gtagatgaagctgacgtaaaagaaggcctcatccaaatcgatggacatacccagcgagtc
agtgagggggccttgtctccagatggaacggtgttggccacggccagccacgacggctac
atcaagttctggcagatctacatcgaaggggttcaagacaagccgaggtgtcttcacgaa
ttgcggcctcacggaggacggcccctgtcctgccttctcttctgtgacaaccacaaaaga
caggaccccgagttagtacacacctgtgcacacgcacaccactctcaggctgttgctctc
ttcacattcctctcctcctctcctctttgtagtgttcctttctggcggttccttataact
ggagcggatcagaaccaggagttgaaaatgtggtgcacagtttcctggacctgcttacag
accatcaggttttccccagatctgttcaactcgtcagttctgccgagtctgaaggccagt
ctggacctcgcttccgagtttctggtcctcaccgacgtccagaggaaggtcctgtacgtg
atggagctccggcaggacctggacaaagggaaggccagtttcacagcggtgtccgagttc
ttgctgacccaccccgtgctcagcttcggggtccgggatgtcgcccactgccgattgcgc
cacaccgaggtcctccctgcagaggaggagagtgagagcatgacagcagagggaactcaa
ggaccaacagagtccaagtctgggatccaaattaaactttactgtgtccacaccaagagt
ctgcaggatgtccagatctggtttcagcccaacttgagttccacactcttcttgaccaac
tctgagcctcaggatggttttgggttctcagaccatctcactgaccagagctccgacaag
gaatcaggaagtggctcccagaccgacctcaggaagatcccatcacttcctgctaccact
gacttcctgtcaaactcgggtgccagcagtcgcaccaagctgatgactcccgatgccttc
atgacacccagcacttcggtaccagcttctcccggcagcagcgccagcagtctgaccatc
gtgacggccctcagcagcaactctgactccacgaacagagccatggacgaagtcagccag
agtccgagcagagcggagaacatcggcggcagcctgacgctctccaccagcagcccgagg
gcggtgtccggtgtgcttatgcctggactggagaacattcagccattagcttccccgagc
gggcctctcgcactcgacagccctcaggttctggactctcccctcctgccccccctggcc
tctccgaccagggcccgctcccccgacgtcatctcctccgcctccacggccatgtcccag
gacatgcccgagatcgcgtcccagacgctgcagctgcagcgcggtctcgtgtccagcctg
gagccgctacctctctctgctctccagacggacagcatggcgtccgccgcatccgccctg
cacctcctcacctccccgcgcacggctaacaacggcttgttgcctctcgagctcggcggt
gccgacgggctcgtgggcggggcggtggagcccgagcccagactcaatcacaccccgtcg
ctactggagaacgccttatcgcaggagaaccccggggccgggggggggtctccagacggc
ggtgttggccacacaccgtggccggctgcgcccgacatcaccagagaaaccaggaacagt
ctcagggacaacggccttggggaatgctcaagagacgagtcgaaggacagacacctgggc
tcgccgtaccaccggcgctcctatcacctcgcacacaacgacagtcaggacgccggcgcg
gagcagagtgaccctgacgacgaggtggccagcctggcgtcgtcctcaggaaactgtggc
tctcgttcctctcacaggctgccggttaaggactggaagacgtcgccgcgatcctcgccg
aaagtgaagaggaagacgaagaaagatgacaatgaattgtctcagtccaggcagatggac
tctggacagatgaacaccgaggtgcaggacgagctgctgatgctcctgcgcagccagcag
agggagctcacggacctgcgtggtcagatcgaagccatgcagagcaccatcatggcccaa
gtggagcacgtcctcaacaaccaccaggaacaagagcagcgccgactagagcgagctcta
gccgagagtcagaatcatcagcagcagcttcaggagcaactcggccagcagctcagcgac
acgctcagcacggtgctgaccaaccggatggacaaggtgctccgggaggaaatgaagaag
accgtcccgccagcgatctccaagagtctggacccggtgacggggcagctgagcaacaca
atcgctgccaagctgaccgctgtggagatcaccctgaaggacaacgtcagcaaggtggtc
aagtccaagaacataacggacgctattggccgagcggcggccgatgccttgcaggggccc
atccaggcggcctacaaagacgccttccagggcaccgtgctgcccgtgtttgagagaggc
tgccagtccatgttccaacagatcaacgacagctttaaacaaggcacacaagaatacatc
ctgcagctggagagccacatgaatgccaggaagcagagggagcaggaggcgcgcgacccc
gtgatcagccaactgcagcagaccatcgagagcttcctgaactccaccgagcagctgacc
agcagcatcacggccaacgtgcgcgcagaggtccagcaccagatccagatgatggtggga
aatctgcaggagtctattcttagccacgtgcagcggatcgtcaaaggggaggtgaccctc
gccatgaaggagcagcaggtggcggtcacctccagcatcatgcaggcgatgaggtcagcg
gccagcacgccggtccccacggcgcacctcgactaccagacgcagcaggccaacatcctg
cagctcctccagcagggccagctgaaccaggctttccagcaggctctgtctgcgacggat
ctgaacctggtcctctacgtgtgcgagaccatcgactcccagcaggtgttcgggcagcac
ccgtgccccctcagccagcccgtgctgctgtcgctcatccagcagctctcctccagcctc
accacccgctccgagctcaagatcagctacctggaggacgccgtgatgaatctggaccac
ggcgacccgctgaccagagaccacatgtcctccgtgttggcccaggtgcggccgaagctg
ttcgccttcctgcagcaggacccccacagcccgctcagcaagagggcgcggcgcctcatg
atgatgctgcaggggctcgtcagccactag
DBGET
integrated database retrieval system
