Pseudoliparis swirei (Mariana hadal snailfish): 130196139
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Entry
130196139 CDS
T09868
Name
(RefSeq) LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor 28-like
KO
K21072
A-kinase anchor protein 28
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130196139
Membrane trafficking [BR:
pswi04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
130196139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_16
RhoGEF
C1_1
PH
C1_2
SOS1_NGEF_PH
PH_13
PHD
PHD_2
Motif
Other DBs
NCBI-GeneID:
130196139
NCBI-ProteinID:
XP_056273995
LinkDB
All DBs
Position
7:complement(24042336..24065806)
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AA seq
1480 aa
AA seq
DB search
MFCLNEEEEEPSQLDCEKSQSTRESQAQSPTLAAAARLSAMIHGKGRVYANAMLVDQVDG
SDIKYRSPEEEEEEEEGEEEVSSEPRLGSPCWDSFSTGPAAPAGDCCQNRHPASPRGGER
GTRGPESLEQRSPRRTSPPSPLASSPSFPSSPLASAFRLFEGAPRRPAQPCLPVSPALNQ
RGCSLTEASRGLSPSLECDSGEDDILGHSYPCAAAKKQFVLRSSSREERDCFDPSPDFNR
TLSDSSHTPAKNPEEAEVRLRSYSYTSPKAKPSRPLLNATISDPTEEQRAFSLSETTREK
RALGFRKRAQSAEEESGASLQHLTLTEFLKEIEDEEWDKYIIPSKVESEKYKVSRTFSFF
KSRMSSTRNKTKVKGKEVKEGKEKAGAANGHQFVPASPSGPALCVACEKPVSGKELLQCS
NCFLNVHKNCRDSVAACGKKPQERNALLLKSKTLSLPHNFVKENSLATMFSSSSSSLPTT
TREKRETVAPLSKSFSLSIDSRRLSDPEGLDSKCGVTACTNSSPADEGTPVTATPPSAEP
PVATQDAVDAPLMSDLSAELLGLEVESWSLAVSPEFCRQHDRHTIKRQEVIYELMQTELH
HIQTLTVMSGVFRRGMLEELQLDWECVARIFPCLDALLLFHKNLFGALLQRRGAAAQPED
SRNYLIHQIGDILLQQFSDEYAEEMKQVYGEFCSHHTEAVGVFKELQQQNKKLQNFIKLQ
SNNTLVRRREVPEFILLVTQRITKYPVLLERILHYTQEGTREHSDLSSALVQIRDIIAAV
DLSVNRYERCQELQEVLARLENKSFAKLKNDKVFRKQDLLSKHRALRYKGLVYWKTATGR
LKDTLALLLTDVLVFLQEKDQRFVFAAVDQKPPVIPLQKLIVREVANEERGMFLISASSV
GPEMYEVHATTRDERNAWMRHIRQAVESCPEEEEEEEEERSAEIEEARRVSEVRVQKIAK
FQETLSGHDQQICSSLEEKLQLYAELTELTLHSPPQAAPQRHLLVRPDTDGETPPRQTSA
LLAAALQEAKNLITILQSRDGLPGRGPSSPVRGPESCSYNSRGSSIQESPSEPDYLSTLS
MSSASPGSDSELTGLDCSPWSPAAEPRRGDAKVTLLKVAESVQSLTQLLYSLQAAVTLQD
SCYEVQKLLLLERERPQLRTIASLHTSLEQEKQRSVDRKKEEVEKRGLERKKEEVDEVQK
LHVKLKQVQQRWDKECLAREKQQCEQESVLEQREQQCLLEAERLRCEREELEAQLLEYQH
NLDRLREGQRGVEREKEQIDAQQQLLLRWRHHRQSSLPVAIRLDGHQGSSHSRSGSLDGN
EAALQQSHRRRPPAVNNNNNHHQHRGLLSAAPPAKTRDGPPRGSGSAADLGLDAGLYNSL
NALLSQGDGRGAYPNHGNHHGEPVRPLRVTAPPHVTNRSFSPPSERRSPGPWRSEVTGHR
PYEDGYSTSPSLTPLLPPQAYLSLEGQNGEEGGEENIVYL
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atgttttgcctaaacgaagaggaggaggagccatcgcagttggactgcgagaaaagccag
tccacaagggagagccaggcccagtccccgactctagctgctgctgccagactctcagcg
atgatacacggcaaaggccgagtgtacgccaacgccatgctggtggaccaggtggatgga
tctgatattaaataccggtctccagaggaggaggaggaggaggaggagggagaggaggag
gtgagctctgagccccgtctcggcagcccatgctgggactccttttccacgggtccagcg
gccccggcgggggactgttgccagaaccggcacccggcctcgccgcgtggcggggagagg
ggcacccgaggcccagagagcctcgagcagcggtccccgcggcgcacatctcccccctct
cccctcgcctcctccccgtcttttccttcctccccactggcttccgccttccgcttgttc
gagggggctccgaggcgtccggcgcagccctgcctgccagtttctcctgctttgaaccag
agaggatgcagcttgaccgaggcgagccggggcctgagtcccagtctcgagtgtgacagc
ggagaggacgacatcctgggacactcgtacccctgcgccgctgcaaagaagcagtttgtc
ctgcggtccagctcacgggaggagagggactgctttgatccgtcaccagactttaaccgc
acgctctctgacagctcgcacacacccgccaagaacccggaggaagccgaggttcgcctg
cgctcctactcgtacacttcgcccaaggcgaagccgtcgcggccgctgctgaacgccacc
atcagcgacccaacagaagagcagagagcattcagcctgtccgagaccaccagagaaaag
agggctttgggtttccgtaagcgggcccagtcggccgaggaggagagcggcgcatcgctc
caacacctcacgctcaccgagttcctcaaagagatcgaggacgaggagtgggacaagtac
atcatcccctccaaggtcgagtcggagaagtacaaagtcagccggaccttcagcttcttc
aagagcaggatgtccagcactcgcaacaagacaaaggtgaaggggaaagaggtgaaggag
gggaaggagaaggcgggagccgccaatggccaccagtttgtcccggcgtctccgtccggc
cccgctctctgtgtggcctgcgagaagcctgtttctgggaaggagctgctgcagtgctcc
aactgtttcctgaacgtccacaaaaactgtcgggattctgttgcagcctgcggcaagaag
ccgcaggagaggaatgcgttgctgctgaaaagcaagaccctgtccctcccacacaacttt
gtgaaagaaaactctctggccaccatgttctcctcttcctcgtcttcacttcccacgaca
accagggagaagagggaaaccgtcgcccccctctccaaaagcttctctctctctatagac
agcagacggctgagcgacccagaggggctggacagcaaatgcggcgtgacagcttgcact
aacagctcgccggccgatgagggaacgccggtcacggcgactcctccgtccgccgagccg
cccgtcgccacgcaggatgccgtggacgctccgctcatgagcgacctgtccgccgagctg
ctgggactggaggtggagtcgtggagcctggcggtcagcccggagttctgcaggcaacac
gacaggcacaccatcaagaggcaggaagtcatttacgagctgatgcagacggagctgcac
cacatccagaccctgacggtcatgtcgggggtgttccggaggggcatgctggaggagctg
cagctcgactgggagtgcgtggcccggatcttcccgtgcctggacgccctgctgctcttc
cacaaaaacctctttggagcgctgctgcagcgccggggggcggcggcccagccagaggac
tcccgcaactacctcatccaccagatcggagacattctgctccagcagttctcagatgaa
tacgccgaggagatgaagcaggtgtacggcgagttctgcagccatcacaccgaggccgtc
ggcgtcttcaaagagctgcagcaacagaacaaaaaactgcaaaactttatcaagctccag
agcaataacaccctggtgaggcggagagaggtgcccgaattcatcctgctggtcactcag
cgcatcaccaagtacccggtgctgctggagaggatactgcactacactcaggagggcact
cgggagcactcggacctgtcgagtgcgttggttcagatccgtgacatcatcgccgcggtg
gacctgagcgtgaacaggtacgagaggtgccaggagctgcaggaagtgctggcgaggctg
gagaacaagagcttcgccaagctaaagaacgacaaggtgttccgcaaacaggacctgctc
agcaagcaccgggccctgcggtacaaggggctggtctactggaagaccgccacgggacgt
ctgaaagacactctggctctcctcctcacagacgtgctggttttcctccaagagaaagac
cagcgctttgtgtttgccgccgtggaccagaagcctcccgtaatccctctgcagaagctc
atcgttcgggaagtagccaacgaggagagagggatgttcctcatctccgcctcttcagtg
ggaccggagatgtatgaagtccacgccaccacgagagacgagaggaacgcctggatgaga
cacatacgacaagctgtggagagttgtcctgaggaagaggaggaggaggaggaggagcga
agcgccgagatcgaggaggccaggcgagtgtcagaagtgcgggttcagaagatcgccaag
ttccaagagacgctgtcgggccacgaccagcagatctgcagcagcctggaggagaagctg
cagctctacgccgagctcacagagttgacgctgcactcgccgccgcaagcggcgccacag
cgccacctgctggtacgaccggacaccgacggcgagacgccgccgcggcagacctcggcg
ctgctcgcggcggcgctccaagaagcgaagaacctgatcaccatcctgcagagccgcgac
ggccttcccggtcgaggtccgagctccccggtccgagggcccgagagctgcagctacaac
agccgcggcagcagcattcaggagtcgccctctgagccggattatctgagcacgctcagc
atgagctccgcctctcccgggtcggacagcgagctgacggggctggactgctcgccgtgg
agccccgccgcggagcccagaagaggcgacgccaaagtgacgctgctgaaggtggcagag
agcgtccagagcctgactcagctcctctacagcctgcaggcggccgtgaccctccaggac
agctgctatgaagtccagaagctcctcctcctggagcgagaaagacctcagctccgaacc
atcgcgtccctccacaccagtctggagcaggagaagcagaggagcgtggaccggaagaaa
gaggaagtggagaagaggggtttggagaggaagaaagaggaagtggacgaggtgcagaag
ctccacgtgaagctgaagcaggtgcagcagcgctgggacaaagagtgtctggccagagag
aaacaacagtgcgagcaggagagcgtgctggagcagcgggagcagcagtgcctcctggag
gccgagcggctgcgctgcgagcgcgaggagctggaggcccagctgctggagtaccagcac
aacctggaccggctgagggagggccagaggggcgtggagcgggagaaggagcagatcgac
gcccagcagcagctgctgctgcgctggaggcaccaccgccagagcagcctgcccgtggcc
atccggctggacgggcaccaggggtcgagccacagccgctccggcagcctggacgggaac
gaggccgccctgcagcagagccaccgccgccggccccccgccgtcaacaacaacaacaac
caccaccagcaccggggtctgctctccgccgcgccgccggctaagacacgcgacggcccg
ccgcgcggctccggctccgccgctgacctgggcctcgacgccggcctctacaacagcctc
aacgcgctgctgagccagggggacggccggggggcgtaccccaaccacgggaaccaccac
ggcgagcccgtccggcctctcagggtcaccgcaccgccgcacgtcaccaacaggagcttc
agcccgccgtcggagcggcgttccccgggtccctggaggtcagaggtcaccggtcacaga
ccctacgaggacggctactccacgtctccctctctcaccccgctcctccccccgcaggcc
tacctctccctcgaaggacagaacggggaggagggaggcgaggagaacatcgtttatctc
tga
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